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The map label for this gene is yxkH [H]

Identifier: 110635086

GI number: 110635086

Start: 2998288

End: 2999043

Strand: Reverse

Name: yxkH [H]

Synonym: Meso_2752

Alternate gene names: 110635086

Gene position: 2999043-2998288 (Counterclockwise)

Preceding gene: 110635100

Following gene: 110635085

Centisome position: 67.97

GC content: 57.01

Gene sequence:

>756_bases
ATGAGATCGAAGGCATTGCCGTATAATTGCGAGCGCTTTGTCCGGCCGGATGGAAGCGCGATACCTGTTCTCATGTATCA
CCAGATATCCAGACCGCCGAGATGCGGTCATCCATATCGCTATCTGACTGTTTCGCCGAGCAATTTCGCTCGTCAAATGA
GATGGTTGAAGCGGCTCGGGTTCCGGGGGCTGTCCATCCGCGACCTGGCGCCGTATTTATCGGGAGAAAAGGTGGGGAAA
GTCGTTGGTATTACCTTCGACGACGGTTATCAAAATAACTTTGAATACGTTCTGCCGGCTCTCGATGCGGTTGGGTTTAC
GGCAACCAACTATTTCGTAAGCGGGCAGATAGGCGGATACAACGCCTGGGACCGAAACATCGGCATTGCGTATTCGCGGT
GCATGAGTAAGGCCCAACTGCGGGAGTGGGCCGCGCTCGGCCAGGAAGTCGGCGCACATACCGTGGATCATGTGCGCCTG
ACGCAGGTGGATATCCGCATTGCGCGGCAACAGATAGGTCAAAGCCGCAGCCACCTTGAGGACATGGTTGGGGAAGCGGT
CACGTCCTTCAGCTATCCCTATGGCGATGTCTCAGGAGCGGTCAGAGAACTTGTGCTGGAGGCCGGGTTCTCTACGGCAG
TGACGACGAAGCGAGGGCGCATCCGCCCGAGCGACGACCGCCTTCTTCTTCCAAGACGAATAATTCGCGCAGACAACCGC
TGGCCCGGTCTGGTGCGCAAATGTGTGACGGGCTGA

Upstream 100 bases:

>100_bases
ATATGCGGGTTTTCAAGGGCGGCCATAATCGCACCGCTATTTGCGAATAGGCGACAGCCTGTTTTGTTATCGTTTATTGC
ATCACGAATTGTGTTTTGAG

Downstream 100 bases:

>100_bases
CGATGTCGAAGCCATTTCTTTTCAGGAACTCCCATTCGGAGCAACGCAGCATCTGTTTGGGCACGGTCACCAGGGACCGT
CCCGTGATGCTCCGGAATCT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MRSKALPYNCERFVRPDGSAIPVLMYHQISRPPRCGHPYRYLTVSPSNFARQMRWLKRLGFRGLSIRDLAPYLSGEKVGK
VVGITFDDGYQNNFEYVLPALDAVGFTATNYFVSGQIGGYNAWDRNIGIAYSRCMSKAQLREWAALGQEVGAHTVDHVRL
TQVDIRIARQQIGQSRSHLEDMVGEAVTSFSYPYGDVSGAVRELVLEAGFSTAVTTKRGRIRPSDDRLLLPRRIIRADNR
WPGLVRKCVTG

Sequences:

>Translated_251_residues
MRSKALPYNCERFVRPDGSAIPVLMYHQISRPPRCGHPYRYLTVSPSNFARQMRWLKRLGFRGLSIRDLAPYLSGEKVGK
VVGITFDDGYQNNFEYVLPALDAVGFTATNYFVSGQIGGYNAWDRNIGIAYSRCMSKAQLREWAALGQEVGAHTVDHVRL
TQVDIRIARQQIGQSRSHLEDMVGEAVTSFSYPYGDVSGAVRELVLEAGFSTAVTTKRGRIRPSDDRLLLPRRIIRADNR
WPGLVRKCVTG
>Mature_251_residues
MRSKALPYNCERFVRPDGSAIPVLMYHQISRPPRCGHPYRYLTVSPSNFARQMRWLKRLGFRGLSIRDLAPYLSGEKVGK
VVGITFDDGYQNNFEYVLPALDAVGFTATNYFVSGQIGGYNAWDRNIGIAYSRCMSKAQLREWAALGQEVGAHTVDHVRL
TQVDIRIARQQIGQSRSHLEDMVGEAVTSFSYPYGDVSGAVRELVLEAGFSTAVTTKRGRIRPSDDRLLLPRRIIRADNR
WPGLVRKCVTG

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28257; Mature: 28257

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSKALPYNCERFVRPDGSAIPVLMYHQISRPPRCGHPYRYLTVSPSNFARQMRWLKRLG
CCCCCCCCCCHHHCCCCCCCCCCCEEHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHC
FRGLSIRDLAPYLSGEKVGKVVGITFDDGYQNNFEYVLPALDAVGFTATNYFVSGQIGGY
CCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCC
NAWDRNIGIAYSRCMSKAQLREWAALGQEVGAHTVDHVRLTQVDIRIARQQIGQSRSHLE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCHHHHHH
DMVGEAVTSFSYPYGDVSGAVRELVLEAGFSTAVTTKRGRIRPSDDRLLLPRRIIRADNR
HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEECCHHHHHCCCC
WPGLVRKCVTG
CHHHHHHHHCC
>Mature Secondary Structure
MRSKALPYNCERFVRPDGSAIPVLMYHQISRPPRCGHPYRYLTVSPSNFARQMRWLKRLG
CCCCCCCCCCHHHCCCCCCCCCCCEEHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHC
FRGLSIRDLAPYLSGEKVGKVVGITFDDGYQNNFEYVLPALDAVGFTATNYFVSGQIGGY
CCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCC
NAWDRNIGIAYSRCMSKAQLREWAALGQEVGAHTVDHVRLTQVDIRIARQQIGQSRSHLE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCHHHHHH
DMVGEAVTSFSYPYGDVSGAVRELVLEAGFSTAVTTKRGRIRPSDDRLLLPRRIIRADNR
HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEECCHHHHHCCCC
WPGLVRKCVTG
CHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]