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The map label for this gene is aam1 [H]

Identifier: 110635013

GI number: 110635013

Start: 2913112

End: 2915127

Strand: Reverse

Name: aam1 [H]

Synonym: Meso_2679

Alternate gene names: 110635013

Gene position: 2915127-2913112 (Counterclockwise)

Preceding gene: 110635022

Following gene: 110635012

Centisome position: 66.07

GC content: 59.62

Gene sequence:

>2016_bases
TTGGATGAGAGATTTTTAGGAATGGACCGTCCCGGTCAGGCGCTCCTTCAGAAGCTTGCTGCCAGCCGAATTGCAATCGA
GGCTGTCGAACCCGCCATCGACGGAGGGCGTTTCGCCGCCAAGACGATCGTGGGGCATCCATTACGCGTGGAAGCAGATA
TTTTCTGCGACGGCCACGAGATAATCGCTGCCGCACTCCTCTACCGCCAGCGAGGTGAAAGGAGCTGGAGAGAGACGCCC
ATGCGCCACCTCGTGAACGATCGCTGGCGAGCAACGGTCGTCTTCGAGGAAGTCGGCCATCACGAATTCAGGATCGCCTC
CTGGCGCGACCTTTTTGCCACCTGGCGGATGGATACCGCCAAGAAGCACGAGGCGGGGCAGAAGATCTCCCTCGAATTGC
AGGAAGGCCGGCTGCTCGTTGAAAAAGCGCTCGGCATTCGCACCGGAGGAACACCGAACGACCGTTCGGCGCTCAAGGCG
CTTCTGGCGGAGGTGACATCCTCCTCATCGGAGGGCGATGCGCTTGCTGTGCTGATGAGCGATGACATGGCCGTGCTCAT
GCGCCGGCTGGGCGTACGCATGAATCTAACGGAGTCCGATAAAGTTTTTCCGGTTTTTGTCGACCGCGAAAAGGCGGGCT
TTTCCGCTTGGTATGAGCTCATGCCGCGGTCGCAATCCGTCAGCCCGGATCGCCACGGCACCTTCGACGATGTGATCGCC
AGGCTTCCCTATGTTCGCGATCTCGGCTTCGACGTGCTTTATTTCCCGCCGATACACCCGATCGGCCGCACAAACCGCAA
GGGCCGCAACAACAGCCTTACGCCAGAGCCGGGCGATCCGGGAAGTCCCTACGCCATCGGCGCGGAAGAGGGTGGGCACG
ATGCGCTCCATCCCGAGCTCGGCTCGTTCGAAGATTTCGCACGGCTGGTTAAGGCCGCAAGCGAGCATGGGCTGGAGATC
GCGCTGGACTTTGCCATCCAGTGCTCGCCCGACCACCCGTGGATCAAGGAGCATCCCGAATGGTTCGACTGGCGGCCTGA
CGGCACCATCAAATTCGCCGAGAATCCGCCAAAGAAATACGAAGATATCGTCAATGTTCATTTCTACCGCGATGCCATCC
CCGGCCTCTGGTACGCGCTGCGCGACATTGTCCTGTTCTGGCTGGAAAGGGGCGTGCGGATCTTCCGCGTGGACAACCCG
CACACCAAGCCGTTGCCCTTCTGGGAATGGATGATCGAGGAGGTGCGGCAGGTCGACCCCGGCGTGATCTTTCTCGCCGA
GGCCTTCACGCGGCCCAAGATGATGAAGCGGCTGGCCAAGGTCGGCTTCAACCAGTCCTATTCCTATTTTACCTGGCGTA
ACACCAAGTGGGAACTCACCGAATATCTGACCGAGCTCACGCGGGAGGAGTGCCGCTATTACATGCGGCCGAACTTCTTC
GTGAACACGCCGGACATCAACCCTCGCTACCTGCAGACGAGCGGCAGGCCGGGTTTTCAGGTGCGGCTCATTCTCGCTGC
CACGCTGGGCACGAACTACGGCGTCTATAGCGGCTTTGAGCTGTGCGAAGCCGAGGCTATGCCCGGCAAGGAAGAGTATC
TCAACTCCGAGAAATACGAGATCCGCGCCTGGGATTGGGACCGTCCAGGGAACATAAAGACGGACATTCTGTTCGTGAAC
CGGCTGCGGCGGGAAAATCCGGCGCTACGGCAGTTCACGAACCTGAAATTCTACAACGCCTGGAACGACAATATTCTCTA
CTACGGCAAGCACACGGACGATCTGACCAGTTTTCTGCTCTTCGCCGTCAATCTCGATCCTCATAACTCGCAGGGCGCCC
ATTTCGAGGTGCCGCTCTGGGAATTCGGGCTGCCGGATGATGCAATGATCGAGGCGGAAGATCTTGTCACCGGCCAACCT
TTCACCTGGACCGGCAAGGTCCAGCACATGCTTCTTGACCCGCACCAGCGCCCCTACATGGCCTGGCGGCTCATCCCTCC
AGGAAGTCGCCGATGA

Upstream 100 bases:

>100_bases
GCCGTCTTCGAGCACCGTCGGCGTGCAAAATATTCCGGTTCCATCCTCTTCCGCAACGGAACCAGCACGCATTCTCAACG
TTGGCCTTGGCAGGGGGAAT

Downstream 100 bases:

>100_bases
ACACGATGGAAAAGGTCGCCTCGGAACTCATGTCTCCAGAAGAGGCCGAAGCTGTCCAGGTCGTGCCGCCTGCCGGCCCG
CGGCCGCCCGATTGGTATAA

Product: alpha amylase, catalytic region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 671; Mature: 671

Protein sequence:

>671_residues
MDERFLGMDRPGQALLQKLAASRIAIEAVEPAIDGGRFAAKTIVGHPLRVEADIFCDGHEIIAAALLYRQRGERSWRETP
MRHLVNDRWRATVVFEEVGHHEFRIASWRDLFATWRMDTAKKHEAGQKISLELQEGRLLVEKALGIRTGGTPNDRSALKA
LLAEVTSSSSEGDALAVLMSDDMAVLMRRLGVRMNLTESDKVFPVFVDREKAGFSAWYELMPRSQSVSPDRHGTFDDVIA
RLPYVRDLGFDVLYFPPIHPIGRTNRKGRNNSLTPEPGDPGSPYAIGAEEGGHDALHPELGSFEDFARLVKAASEHGLEI
ALDFAIQCSPDHPWIKEHPEWFDWRPDGTIKFAENPPKKYEDIVNVHFYRDAIPGLWYALRDIVLFWLERGVRIFRVDNP
HTKPLPFWEWMIEEVRQVDPGVIFLAEAFTRPKMMKRLAKVGFNQSYSYFTWRNTKWELTEYLTELTREECRYYMRPNFF
VNTPDINPRYLQTSGRPGFQVRLILAATLGTNYGVYSGFELCEAEAMPGKEEYLNSEKYEIRAWDWDRPGNIKTDILFVN
RLRRENPALRQFTNLKFYNAWNDNILYYGKHTDDLTSFLLFAVNLDPHNSQGAHFEVPLWEFGLPDDAMIEAEDLVTGQP
FTWTGKVQHMLLDPHQRPYMAWRLIPPGSRR

Sequences:

>Translated_671_residues
MDERFLGMDRPGQALLQKLAASRIAIEAVEPAIDGGRFAAKTIVGHPLRVEADIFCDGHEIIAAALLYRQRGERSWRETP
MRHLVNDRWRATVVFEEVGHHEFRIASWRDLFATWRMDTAKKHEAGQKISLELQEGRLLVEKALGIRTGGTPNDRSALKA
LLAEVTSSSSEGDALAVLMSDDMAVLMRRLGVRMNLTESDKVFPVFVDREKAGFSAWYELMPRSQSVSPDRHGTFDDVIA
RLPYVRDLGFDVLYFPPIHPIGRTNRKGRNNSLTPEPGDPGSPYAIGAEEGGHDALHPELGSFEDFARLVKAASEHGLEI
ALDFAIQCSPDHPWIKEHPEWFDWRPDGTIKFAENPPKKYEDIVNVHFYRDAIPGLWYALRDIVLFWLERGVRIFRVDNP
HTKPLPFWEWMIEEVRQVDPGVIFLAEAFTRPKMMKRLAKVGFNQSYSYFTWRNTKWELTEYLTELTREECRYYMRPNFF
VNTPDINPRYLQTSGRPGFQVRLILAATLGTNYGVYSGFELCEAEAMPGKEEYLNSEKYEIRAWDWDRPGNIKTDILFVN
RLRRENPALRQFTNLKFYNAWNDNILYYGKHTDDLTSFLLFAVNLDPHNSQGAHFEVPLWEFGLPDDAMIEAEDLVTGQP
FTWTGKVQHMLLDPHQRPYMAWRLIPPGSRR
>Mature_671_residues
MDERFLGMDRPGQALLQKLAASRIAIEAVEPAIDGGRFAAKTIVGHPLRVEADIFCDGHEIIAAALLYRQRGERSWRETP
MRHLVNDRWRATVVFEEVGHHEFRIASWRDLFATWRMDTAKKHEAGQKISLELQEGRLLVEKALGIRTGGTPNDRSALKA
LLAEVTSSSSEGDALAVLMSDDMAVLMRRLGVRMNLTESDKVFPVFVDREKAGFSAWYELMPRSQSVSPDRHGTFDDVIA
RLPYVRDLGFDVLYFPPIHPIGRTNRKGRNNSLTPEPGDPGSPYAIGAEEGGHDALHPELGSFEDFARLVKAASEHGLEI
ALDFAIQCSPDHPWIKEHPEWFDWRPDGTIKFAENPPKKYEDIVNVHFYRDAIPGLWYALRDIVLFWLERGVRIFRVDNP
HTKPLPFWEWMIEEVRQVDPGVIFLAEAFTRPKMMKRLAKVGFNQSYSYFTWRNTKWELTEYLTELTREECRYYMRPNFF
VNTPDINPRYLQTSGRPGFQVRLILAATLGTNYGVYSGFELCEAEAMPGKEEYLNSEKYEIRAWDWDRPGNIKTDILFVN
RLRRENPALRQFTNLKFYNAWNDNILYYGKHTDDLTSFLLFAVNLDPHNSQGAHFEVPLWEFGLPDDAMIEAEDLVTGQP
FTWTGKVQHMLLDPHQRPYMAWRLIPPGSRR

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family. GlgE subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021828
- InterPro:   IPR006047
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF11896 DUF3416 [H]

EC number: NA

Molecular weight: Translated: 77407; Mature: 77407

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDERFLGMDRPGQALLQKLAASRIAIEAVEPAIDGGRFAAKTIVGHPLRVEADIFCDGHE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHCCCCEEEEEEEEECCHH
IIAAALLYRQRGERSWRETPMRHLVNDRWRATVVFEEVGHHEFRIASWRDLFATWRMDTA
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEHHHHHHHHHHCCCCH
KKHEAGQKISLELQEGRLLVEKALGIRTGGTPNDRSALKALLAEVTSSSSEGDALAVLMS
HHHCCCCEEEEEEECCEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEC
DDMAVLMRRLGVRMNLTESDKVFPVFVDREKAGFSAWYELMPRSQSVSPDRHGTFDDVIA
CCHHHHHHHCCCEEECCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHH
RLPYVRDLGFDVLYFPPIHPIGRTNRKGRNNSLTPEPGDPGSPYAIGAEEGGHDALHPEL
HCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
GSFEDFARLVKAASEHGLEIALDFAIQCSPDHPWIKEHPEWFDWRPDGTIKFAENPPKKY
CCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCHHHCCCCCCCCCCCCEEEECCCCCHHH
EDIVNVHFYRDAIPGLWYALRDIVLFWLERGVRIFRVDNPHTKPLPFWEWMIEEVRQVDP
HHHHEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCC
GVIFLAEAFTRPKMMKRLAKVGFNQSYSYFTWRNTKWELTEYLTELTREECRYYMRPNFF
CEEEEEHHHCCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEE
VNTPDINPRYLQTSGRPGFQVRLILAATLGTNYGVYSGFELCEAEAMPGKEEYLNSEKYE
EECCCCCCCEEECCCCCCEEEEEEEEEECCCCCCCCCCHHHHHCCCCCCHHHHCCCCCEE
IRAWDWDRPGNIKTDILFVNRLRRENPALRQFTNLKFYNAWNDNILYYGKHTDDLTSFLL
EEEECCCCCCCCEEHHHHHHHHHCCCHHHHHHHCCEEEEECCCCEEEECCCCHHHHEEEE
FAVNLDPHNSQGAHFEVPLWEFGLPDDAMIEAEDLVTGQPFTWTGKVQHMLLDPHQRPYM
EEEECCCCCCCCCEEECCHHCCCCCCCCEEEHHHHCCCCCEEECCCHHEEEECCCCCCEE
AWRLIPPGSRR
EEEECCCCCCC
>Mature Secondary Structure
MDERFLGMDRPGQALLQKLAASRIAIEAVEPAIDGGRFAAKTIVGHPLRVEADIFCDGHE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHCCCCEEEEEEEEECCHH
IIAAALLYRQRGERSWRETPMRHLVNDRWRATVVFEEVGHHEFRIASWRDLFATWRMDTA
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEHHHHHHHHHHCCCCH
KKHEAGQKISLELQEGRLLVEKALGIRTGGTPNDRSALKALLAEVTSSSSEGDALAVLMS
HHHCCCCEEEEEEECCEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEC
DDMAVLMRRLGVRMNLTESDKVFPVFVDREKAGFSAWYELMPRSQSVSPDRHGTFDDVIA
CCHHHHHHHCCCEEECCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHH
RLPYVRDLGFDVLYFPPIHPIGRTNRKGRNNSLTPEPGDPGSPYAIGAEEGGHDALHPEL
HCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
GSFEDFARLVKAASEHGLEIALDFAIQCSPDHPWIKEHPEWFDWRPDGTIKFAENPPKKY
CCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCHHHCCCCCCCCCCCCEEEECCCCCHHH
EDIVNVHFYRDAIPGLWYALRDIVLFWLERGVRIFRVDNPHTKPLPFWEWMIEEVRQVDP
HHHHEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCC
GVIFLAEAFTRPKMMKRLAKVGFNQSYSYFTWRNTKWELTEYLTELTREECRYYMRPNFF
CEEEEEHHHCCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEE
VNTPDINPRYLQTSGRPGFQVRLILAATLGTNYGVYSGFELCEAEAMPGKEEYLNSEKYE
EECCCCCCCEEECCCCCCEEEEEEEEEECCCCCCCCCCHHHHHCCCCCCHHHHCCCCCEE
IRAWDWDRPGNIKTDILFVNRLRRENPALRQFTNLKFYNAWNDNILYYGKHTDDLTSFLL
EEEECCCCCCCCEEHHHHHHHHHCCCHHHHHHHCCEEEEECCCCEEEECCCCHHHHEEEE
FAVNLDPHNSQGAHFEVPLWEFGLPDDAMIEAEDLVTGQPFTWTGKVQHMLLDPHQRPYM
EEEECCCCCCCCCEEECCHHCCCCCCCCEEEHHHHCCCCCEEECCCHHEEEECCCCCCEE
AWRLIPPGSRR
EEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10970853 [H]