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The map label for this gene is glgB [H]

Identifier: 110634762

GI number: 110634762

Start: 2593989

End: 2595770

Strand: Reverse

Name: glgB [H]

Synonym: Meso_2421

Alternate gene names: 110634762

Gene position: 2595770-2593989 (Counterclockwise)

Preceding gene: 110634768

Following gene: 110634758

Centisome position: 58.83

GC content: 59.6

Gene sequence:

>1782_bases
ATGCAAGAGGGTATGGGCGCGATCGTCCACGGAAACGGCGTGGCATTCCGCGTTTGGGCTCCTCATGCCGACGCGGTGTC
GGTCGTCGGCACTTTCAACGACTGGTCGGACGAGGCCGCGCCGATGACCGCCGAAGATGGCGGGTTCTGGTACGCGGACC
TGCCTTCCGCAAAGCCCGGCGACGAATACCGGTTCCTAATCCGTAACGGCGAAAAACGCCTGTCGCGCATTGACCCTTAT
GCCCGCGCTGTGACGAATTCGGTCGGCAACGGCATCATCGTCGAGCAGCAGGACGACTGGCATGAGGCCGAATTCGAAAC
ACCGCCATGGAACGAGTTGGTCATCTACGAGATGCACATCGGCACCTTCCATCGGCCGCAAGACAATGAGCTCGGTACGT
TCGACGATGCCACCGAAAGGCTTGCCCATCTGAAGCGCCTTGGGATCAATGCTGTGCAGATTATGCCAGCGATGGAGTTC
GCCGGCGATATCTCCTGGGGATACAACCCGGCGCATATCTTTGCCATTGAAAGCTCCTATGGCGGGCCGGCTGCCTTCAA
GGCCTTTATCAACGCGGCGCATAAGCAGGGGATCGCTGTCATCCTCGACGTGGTCTACAACCATTTCGGGCCGAGTGATC
TCGATCTCTGGCAGTTCGACGGCTGGAGCGAAGACGACAAGGGCGGCATTTATTTTTACAACGACTGGCGCAGCGATACT
CCATGGGGCGATACGCGTCCCGTTTACGGCCGCGGTGAAGTCCGCCAGTTCATCCGAGACAATGCCCTTTTCTGGCTCGA
AGAGTACCATCTCGACGGTCTGCGTTTCGACATGACGCTCTACATTCGCAATGTGCGCGGCGACGAAGGGGATGAGGGCG
ATGCAATCCCCGAGGGCTGGAGCCTGTTGCAGTGGGTCAACAGCGAAATCCGCGAGCGCCTTCCCGGCCGCATTACCATC
GCCGAGGACCTGCGCAACAAGGCGGAAATCACAGGCGCAGTCGATGAAGGCGGCGCAGGGTTCGGCGCGCAATGGGATTC
TGAGTTCGTGCACCCGATCCGCGAGACGCTGATTGCGCCTGATGATGAGTCCCGGCACATGGGAACCGTCGCCCATGCGC
TCGGCCATTCCTATAATGGGGATCCTTTCCAGCGGGTCGTCTATACCGAATCCCATGACGAAGTGGCCAATGGAAAGGCT
CGCATCCCGCATGAGATCGCGCCGGGCGACCCTTCGCATTGGGCGGCGCAAAAGCGCTCAACGCTGGGTGCCGCGCTCAT
GCTTACGGCCCCCGGCATTCCGATGCTGTTCCAGGGCCAGGAGTTTCTGCAAGGCGAATGGTTCCAGGATACGGTTCCTC
TGGACTGGGATCAGAGCGAGGAATTCAAGGGCATCGTCCGCCTCTACCGCGATCTCATTCGCCTGCGCCGAAATCAAATG
TCGGTCACGTCCGGCCTGCTTGGCCGAAATACCCGAATCTTCAGGGTCGACGAGGAAAAGAAGCTTATCGCCTTTCACCG
GTGGGTCGAAGGCGGGCCGCGGGACGATGTCGTCGTCGTCGCAAATTTCAGCCATCAGGCATATGCATCCTATCGCATGG
GCTTTCCAAGGCAGGGCCTTTGGAACCTCCGTCTCAACACGGATTGGAGCGGCTACAGCCCGGATTTCGGCAGTTTCGAA
AGCCACGATGTGGTTGCCGAAGCCGTGGAATGCGATGGGCTCTCCTGGTCTGGAGAGGTGGCGATAGGTCCCTACACCGC
GCTTGTGTTCTCACAAGACTGA

Upstream 100 bases:

>100_bases
CGCTCGACTGTCGGAACCAAACGGCTCCGTGGCTGTTGCAACAGTCCGCCGCAGAACAGCCGCCGATGCGGCTCGCGCCT
GGCTTCAAGGAGAATCCATC

Downstream 100 bases:

>100_bases
CATGGCGAGCAGTCGCAGATCATGGCGACCATGCCCGTCCGCCCGCGTGCAGCGGTCCTAGAGGCTCGTCGCTGTATTGC
TTTTGACGCTACGATCAGTC

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE [H]

Number of amino acids: Translated: 593; Mature: 593

Protein sequence:

>593_residues
MQEGMGAIVHGNGVAFRVWAPHADAVSVVGTFNDWSDEAAPMTAEDGGFWYADLPSAKPGDEYRFLIRNGEKRLSRIDPY
ARAVTNSVGNGIIVEQQDDWHEAEFETPPWNELVIYEMHIGTFHRPQDNELGTFDDATERLAHLKRLGINAVQIMPAMEF
AGDISWGYNPAHIFAIESSYGGPAAFKAFINAAHKQGIAVILDVVYNHFGPSDLDLWQFDGWSEDDKGGIYFYNDWRSDT
PWGDTRPVYGRGEVRQFIRDNALFWLEEYHLDGLRFDMTLYIRNVRGDEGDEGDAIPEGWSLLQWVNSEIRERLPGRITI
AEDLRNKAEITGAVDEGGAGFGAQWDSEFVHPIRETLIAPDDESRHMGTVAHALGHSYNGDPFQRVVYTESHDEVANGKA
RIPHEIAPGDPSHWAAQKRSTLGAALMLTAPGIPMLFQGQEFLQGEWFQDTVPLDWDQSEEFKGIVRLYRDLIRLRRNQM
SVTSGLLGRNTRIFRVDEEKKLIAFHRWVEGGPRDDVVVVANFSHQAYASYRMGFPRQGLWNLRLNTDWSGYSPDFGSFE
SHDVVAEAVECDGLSWSGEVAIGPYTALVFSQD

Sequences:

>Translated_593_residues
MQEGMGAIVHGNGVAFRVWAPHADAVSVVGTFNDWSDEAAPMTAEDGGFWYADLPSAKPGDEYRFLIRNGEKRLSRIDPY
ARAVTNSVGNGIIVEQQDDWHEAEFETPPWNELVIYEMHIGTFHRPQDNELGTFDDATERLAHLKRLGINAVQIMPAMEF
AGDISWGYNPAHIFAIESSYGGPAAFKAFINAAHKQGIAVILDVVYNHFGPSDLDLWQFDGWSEDDKGGIYFYNDWRSDT
PWGDTRPVYGRGEVRQFIRDNALFWLEEYHLDGLRFDMTLYIRNVRGDEGDEGDAIPEGWSLLQWVNSEIRERLPGRITI
AEDLRNKAEITGAVDEGGAGFGAQWDSEFVHPIRETLIAPDDESRHMGTVAHALGHSYNGDPFQRVVYTESHDEVANGKA
RIPHEIAPGDPSHWAAQKRSTLGAALMLTAPGIPMLFQGQEFLQGEWFQDTVPLDWDQSEEFKGIVRLYRDLIRLRRNQM
SVTSGLLGRNTRIFRVDEEKKLIAFHRWVEGGPRDDVVVVANFSHQAYASYRMGFPRQGLWNLRLNTDWSGYSPDFGSFE
SHDVVAEAVECDGLSWSGEVAIGPYTALVFSQD
>Mature_593_residues
MQEGMGAIVHGNGVAFRVWAPHADAVSVVGTFNDWSDEAAPMTAEDGGFWYADLPSAKPGDEYRFLIRNGEKRLSRIDPY
ARAVTNSVGNGIIVEQQDDWHEAEFETPPWNELVIYEMHIGTFHRPQDNELGTFDDATERLAHLKRLGINAVQIMPAMEF
AGDISWGYNPAHIFAIESSYGGPAAFKAFINAAHKQGIAVILDVVYNHFGPSDLDLWQFDGWSEDDKGGIYFYNDWRSDT
PWGDTRPVYGRGEVRQFIRDNALFWLEEYHLDGLRFDMTLYIRNVRGDEGDEGDAIPEGWSLLQWVNSEIRERLPGRITI
AEDLRNKAEITGAVDEGGAGFGAQWDSEFVHPIRETLIAPDDESRHMGTVAHALGHSYNGDPFQRVVYTESHDEVANGKA
RIPHEIAPGDPSHWAAQKRSTLGAALMLTAPGIPMLFQGQEFLQGEWFQDTVPLDWDQSEEFKGIVRLYRDLIRLRRNQM
SVTSGLLGRNTRIFRVDEEKKLIAFHRWVEGGPRDDVVVVANFSHQAYASYRMGFPRQGLWNLRLNTDWSGYSPDFGSFE
SHDVVAEAVECDGLSWSGEVAIGPYTALVFSQD

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=635, Percent_Identity=26.4566929133858, Blast_Score=150, Evalue=3e-36,
Organism=Escherichia coli, GI1789839, Length=568, Percent_Identity=30.8098591549296, Blast_Score=204, Evalue=2e-53,
Organism=Escherichia coli, GI2367229, Length=330, Percent_Identity=26.969696969697, Blast_Score=99, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17554896, Length=417, Percent_Identity=28.0575539568345, Blast_Score=134, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI32564391, Length=396, Percent_Identity=27.2727272727273, Blast_Score=115, Evalue=6e-26,
Organism=Saccharomyces cerevisiae, GI6320826, Length=671, Percent_Identity=25.0372578241431, Blast_Score=132, Evalue=2e-31,
Organism=Drosophila melanogaster, GI28573410, Length=422, Percent_Identity=31.042654028436, Blast_Score=151, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]

EC number: =2.4.1.18 [H]

Molecular weight: Translated: 66822; Mature: 66822

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEGMGAIVHGNGVAFRVWAPHADAVSVVGTFNDWSDEAAPMTAEDGGFWYADLPSAKPG
CCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCEECCCCEEEEECCCCCCC
DEYRFLIRNGEKRLSRIDPYARAVTNSVGNGIIVEQQDDWHEAEFETPPWNELVIYEMHI
CCEEEEEECCHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEC
GTFHRPQDNELGTFDDATERLAHLKRLGINAVQIMPAMEFAGDISWGYNPAHIFAIESSY
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCEEEEEEECCC
GGPAAFKAFINAAHKQGIAVILDVVYNHFGPSDLDLWQFDGWSEDDKGGIYFYNDWRSDT
CCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCC
PWGDTRPVYGRGEVRQFIRDNALFWLEEYHLDGLRFDMTLYIRNVRGDEGDEGDAIPEGW
CCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCHH
SLLQWVNSEIRERLPGRITIAEDLRNKAEITGAVDEGGAGFGAQWDSEFVHPIRETLIAP
HHHHHHHHHHHHHCCCEEEEHHHHCCHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC
DDESRHMGTVAHALGHSYNGDPFQRVVYTESHDEVANGKARIPHEIAPGDPSHWAAQKRS
CCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCHHCCCCCCCCCCCCCCCCHHHHHHHHH
TLGAALMLTAPGIPMLFQGQEFLQGEWFQDTVPLDWDQSEEFKGIVRLYRDLIRLRRNQM
HCCEEEEEECCCCCEEECCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SVTSGLLGRNTRIFRVDEEKKLIAFHRWVEGGPRDDVVVVANFSHQAYASYRMGFPRQGL
HHHHHHCCCCEEEEEECCCCCEEEHHHHHCCCCCCCEEEEECCCCHHHHHHHCCCCCCCE
WNLRLNTDWSGYSPDFGSFESHDVVAEAVECDGLSWSGEVAIGPYTALVFSQD
EEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCEEEEEEECC
>Mature Secondary Structure
MQEGMGAIVHGNGVAFRVWAPHADAVSVVGTFNDWSDEAAPMTAEDGGFWYADLPSAKPG
CCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCEECCCCEEEEECCCCCCC
DEYRFLIRNGEKRLSRIDPYARAVTNSVGNGIIVEQQDDWHEAEFETPPWNELVIYEMHI
CCEEEEEECCHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEC
GTFHRPQDNELGTFDDATERLAHLKRLGINAVQIMPAMEFAGDISWGYNPAHIFAIESSY
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCEEEEEEECCC
GGPAAFKAFINAAHKQGIAVILDVVYNHFGPSDLDLWQFDGWSEDDKGGIYFYNDWRSDT
CCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCC
PWGDTRPVYGRGEVRQFIRDNALFWLEEYHLDGLRFDMTLYIRNVRGDEGDEGDAIPEGW
CCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCHH
SLLQWVNSEIRERLPGRITIAEDLRNKAEITGAVDEGGAGFGAQWDSEFVHPIRETLIAP
HHHHHHHHHHHHHCCCEEEEHHHHCCHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC
DDESRHMGTVAHALGHSYNGDPFQRVVYTESHDEVANGKARIPHEIAPGDPSHWAAQKRS
CCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCHHCCCCCCCCCCCCCCCCHHHHHHHHH
TLGAALMLTAPGIPMLFQGQEFLQGEWFQDTVPLDWDQSEEFKGIVRLYRDLIRLRRNQM
HCCEEEEEECCCCCEEECCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SVTSGLLGRNTRIFRVDEEKKLIAFHRWVEGGPRDDVVVVANFSHQAYASYRMGFPRQGL
HHHHHHCCCCEEEEEECCCCCEEEHHHHHCCCCCCCEEEEECCCCHHHHHHHCCCCCCCE
WNLRLNTDWSGYSPDFGSFESHDVVAEAVECDGLSWSGEVAIGPYTALVFSQD
EEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA