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The map label for this gene is ybfI [H]

Identifier: 110634754

GI number: 110634754

Start: 2576735

End: 2577652

Strand: Direct

Name: ybfI [H]

Synonym: Meso_2413

Alternate gene names: 110634754

Gene position: 2576735-2577652 (Clockwise)

Preceding gene: 110634753

Following gene: 110634755

Centisome position: 58.4

GC content: 55.34

Gene sequence:

>918_bases
ATGATGCAGCATATCGCGACATTGAAGCGCAGCACCCGCCATTCGCTCTCACGCAGAAGAGACCACCAGTTTCTCCACGT
GATCCCCGAGAACACCGGTCCGCGCGTGGCGACCTCAAAAGGTTGCGCGATCTACGCTCGCCATCAGCCTAGCCTGCGAA
GCCTGACGGCGGAGGCCCATTTTGCGGCCGTGAACCTGCCGTCGACGCCAAATAATCAGTCGTCGTTGCAATGCGAAAAG
TTTCGAACGCACGATGCCCCTGCCGGATCGCTTGCGATTCAGCCTGCTAATGTCGAAGGGCCTCCGGTCTGGTCTCATTT
CAAAGAGAGCCTGATCATCGTCATCAAGCCCGCGAGCCTGCTCGAACTGGCGGCGAAGGAACTTGATCTCGGAGATGTCA
CTCTCCAGCCCCCCGCATTGGGGACTGTCGATTTTCAAGCGCTCCACATTGCCGAGCTCCTGAAGGTGGAATTGGTGCGG
CAGGAGGAAGCCATCGAGCTTTATGTCGATTCGCTGGTCACAATCTTTGCCCTCCACTTGCTGCGAAACTATGTGGGGGC
ACACACGTCGCCTAGACCCAGATCCGGTCTTTCCCTCGGCGACGCAAAAAGAGTGCGCGAGTTTCTGGACGAAAACTTCA
CCCGTAAACTGTCCATACCAGAGCTTGCGGATATTGCCGGCCTTTCGCCATTTTATTTCATTCGCGCGTTTAACAAGACA
TTCGGTCAGTCGCCGCACCAGTATATCCTTAATCTACGGCTGAACTTTGCCGAGAAACTTCTGTTGGAAGGCAATATAAA
AATCGCTGAGATCGCCTATCTCGCCGGGTTCTCAAGCCAGAGCCACCTGACTGCAGCCATGAAGCGATCCCGGAAAGAAA
CACCAGCAGATATAAGGCGGCGCGGCAAAGATCTCTAG

Upstream 100 bases:

>100_bases
CGCCGCTTAACAGAATCCCATCGAGCGATTCTATCGCGAACCTTCCAGGGGTTCGCGGGGAATACGGCCGACCGGTGACG
CGCACTGAACTTCTTTGGCA

Downstream 100 bases:

>100_bases
AAGTATACTCAGCATTGTTGAATAATTGCGATAGTACACGATCAGATTGCAGCAATTTTGCAACACATTCTGAAAAGCGA
CCCCTTGAGCAATATCCTGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MMQHIATLKRSTRHSLSRRRDHQFLHVIPENTGPRVATSKGCAIYARHQPSLRSLTAEAHFAAVNLPSTPNNQSSLQCEK
FRTHDAPAGSLAIQPANVEGPPVWSHFKESLIIVIKPASLLELAAKELDLGDVTLQPPALGTVDFQALHIAELLKVELVR
QEEAIELYVDSLVTIFALHLLRNYVGAHTSPRPRSGLSLGDAKRVREFLDENFTRKLSIPELADIAGLSPFYFIRAFNKT
FGQSPHQYILNLRLNFAEKLLLEGNIKIAEIAYLAGFSSQSHLTAAMKRSRKETPADIRRRGKDL

Sequences:

>Translated_305_residues
MMQHIATLKRSTRHSLSRRRDHQFLHVIPENTGPRVATSKGCAIYARHQPSLRSLTAEAHFAAVNLPSTPNNQSSLQCEK
FRTHDAPAGSLAIQPANVEGPPVWSHFKESLIIVIKPASLLELAAKELDLGDVTLQPPALGTVDFQALHIAELLKVELVR
QEEAIELYVDSLVTIFALHLLRNYVGAHTSPRPRSGLSLGDAKRVREFLDENFTRKLSIPELADIAGLSPFYFIRAFNKT
FGQSPHQYILNLRLNFAEKLLLEGNIKIAEIAYLAGFSSQSHLTAAMKRSRKETPADIRRRGKDL
>Mature_305_residues
MMQHIATLKRSTRHSLSRRRDHQFLHVIPENTGPRVATSKGCAIYARHQPSLRSLTAEAHFAAVNLPSTPNNQSSLQCEK
FRTHDAPAGSLAIQPANVEGPPVWSHFKESLIIVIKPASLLELAAKELDLGDVTLQPPALGTVDFQALHIAELLKVELVR
QEEAIELYVDSLVTIFALHLLRNYVGAHTSPRPRSGLSLGDAKRVREFLDENFTRKLSIPELADIAGLSPFYFIRAFNKT
FGQSPHQYILNLRLNFAEKLLLEGNIKIAEIAYLAGFSSQSHLTAAMKRSRKETPADIRRRGKDL

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34033; Mature: 34033

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQHIATLKRSTRHSLSRRRDHQFLHVIPENTGPRVATSKGCAIYARHQPSLRSLTAEAH
CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCCCEEEEECCCHHHHHHHHHH
FAAVNLPSTPNNQSSLQCEKFRTHDAPAGSLAIQPANVEGPPVWSHFKESLIIVIKPASL
EEEEECCCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCCEEEEECCHHH
LELAAKELDLGDVTLQPPALGTVDFQALHIAELLKVELVRQEEAIELYVDSLVTIFALHL
HHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRNYVGAHTSPRPRSGLSLGDAKRVREFLDENFTRKLSIPELADIAGLSPFYFIRAFNKT
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCHHHHHHCCCHHHHHHHHHHH
FGQSPHQYILNLRLNFAEKLLLEGNIKIAEIAYLAGFSSQSHLTAAMKRSRKETPADIRR
HCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCHHHHHHHHHCCCCCCHHHHH
RGKDL
CCCCC
>Mature Secondary Structure
MMQHIATLKRSTRHSLSRRRDHQFLHVIPENTGPRVATSKGCAIYARHQPSLRSLTAEAH
CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCCCEEEEECCCHHHHHHHHHH
FAAVNLPSTPNNQSSLQCEKFRTHDAPAGSLAIQPANVEGPPVWSHFKESLIIVIKPASL
EEEEECCCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCCEEEEECCHHH
LELAAKELDLGDVTLQPPALGTVDFQALHIAELLKVELVRQEEAIELYVDSLVTIFALHL
HHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRNYVGAHTSPRPRSGLSLGDAKRVREFLDENFTRKLSIPELADIAGLSPFYFIRAFNKT
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCHHHHHHCCCHHHHHHHHHHH
FGQSPHQYILNLRLNFAEKLLLEGNIKIAEIAYLAGFSSQSHLTAAMKRSRKETPADIRR
HCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCHHHHHHHHHCCCCCCHHHHH
RGKDL
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]