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The map label for this gene is yagI [H]

Identifier: 110634710

GI number: 110634710

Start: 2519609

End: 2520370

Strand: Direct

Name: yagI [H]

Synonym: Meso_2367

Alternate gene names: 110634710

Gene position: 2519609-2520370 (Clockwise)

Preceding gene: 110634701

Following gene: 110634718

Centisome position: 57.1

GC content: 61.29

Gene sequence:

>762_bases
ATGACAAACAGCCAATCACTCGAACGAGCGCTTCAGATTCTTGACCTGCTGGACCGCGCCAATGAACCGATGGGCATCCG
CGAGATCGCCCGCCACATCGGGCTCAGCAATGCGATCGTACAGCGCCTGGTGAATACCTTCCTTGAGCACGGCTTTGTCG
AGCAGGACAGAATAAGCCGCCGCTACAGCATCGGCTACCGCGCATTCAGCCTGGGCAATTCGATCCTGAGAAAGGACCGC
ATGATCGTGTCGGCGCAGCGGCAGTTGGAAATGGTCGCAAGCAACCACGAACTGAACGGCTATCTCGGCCGGCGCCATGG
CAACCAAGCCGTCTATCTGCTCTGCGTGCAATCGGTTGGGCCGATTGCCATCCGCAATTCGCCGGGCGAGCTGGCATTTT
TGCACAGCACCGCCATGGGCAAGGTCTTGCTTGCGGCGTTGGATGACGCCGAGGCCGAAGCGATCCTCCGTGAGAAGCCG
CTTCCTAAGATGACGCCCGCCACGATTACCGATCCGGACGTGATTATTAAGCAGGTTCGAGAGGCACGTGAGGCCGGCTA
CGCCAGCGTGGTTGAAGAGACGATACTGGGCGTGATCTCGGTCGGCGCGCCGGTGCGCAATGCCTCCGGCGAAGTGCAAG
CTGCCATGAGCGTGGCATTCGCCGAACGATCTTCGCCGCATTTGACGATCGACAACGTCGCGCCCATCGTGGTGGCCGCC
GCCGACACCGTCTCGCGCGATCTGGGCTGGTCGCCGGGCTGA

Upstream 100 bases:

>100_bases
ATTTGTAGAGTAGTGCGCTATTCCTGTCAATGCGTGTGCCCCCCTTGCCTTTGCTTCACGTTTCCTGGATTACGTTTTCA
CCCTGCCTTTCAGAAGAGCC

Downstream 100 bases:

>100_bases
AAAAGATCGGATCGCAGGCGGCGCGCCGCTCGGATCAGCGCCGGATAAGCAGGATTTCAGCATCCAGGAAGCTCCGTGTG
ATCGATTGGGCTACCGTCAA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MTNSQSLERALQILDLLDRANEPMGIREIARHIGLSNAIVQRLVNTFLEHGFVEQDRISRRYSIGYRAFSLGNSILRKDR
MIVSAQRQLEMVASNHELNGYLGRRHGNQAVYLLCVQSVGPIAIRNSPGELAFLHSTAMGKVLLAALDDAEAEAILREKP
LPKMTPATITDPDVIIKQVREAREAGYASVVEETILGVISVGAPVRNASGEVQAAMSVAFAERSSPHLTIDNVAPIVVAA
ADTVSRDLGWSPG

Sequences:

>Translated_253_residues
MTNSQSLERALQILDLLDRANEPMGIREIARHIGLSNAIVQRLVNTFLEHGFVEQDRISRRYSIGYRAFSLGNSILRKDR
MIVSAQRQLEMVASNHELNGYLGRRHGNQAVYLLCVQSVGPIAIRNSPGELAFLHSTAMGKVLLAALDDAEAEAILREKP
LPKMTPATITDPDVIIKQVREAREAGYASVVEETILGVISVGAPVRNASGEVQAAMSVAFAERSSPHLTIDNVAPIVVAA
ADTVSRDLGWSPG
>Mature_252_residues
TNSQSLERALQILDLLDRANEPMGIREIARHIGLSNAIVQRLVNTFLEHGFVEQDRISRRYSIGYRAFSLGNSILRKDRM
IVSAQRQLEMVASNHELNGYLGRRHGNQAVYLLCVQSVGPIAIRNSPGELAFLHSTAMGKVLLAALDDAEAEAILREKPL
PKMTPATITDPDVIIKQVREAREAGYASVVEETILGVISVGAPVRNASGEVQAAMSVAFAERSSPHLTIDNVAPIVVAAA
DTVSRDLGWSPG

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=246, Percent_Identity=29.2682926829268, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788131, Length=247, Percent_Identity=27.1255060728745, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082359, Length=217, Percent_Identity=27.1889400921659, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1786715, Length=220, Percent_Identity=27.7272727272727, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788581, Length=245, Percent_Identity=28.1632653061224, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790752, Length=209, Percent_Identity=25.8373205741627, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789999, Length=255, Percent_Identity=24.3137254901961, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 27501; Mature: 27370

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSQSLERALQILDLLDRANEPMGIREIARHIGLSNAIVQRLVNTFLEHGFVEQDRISR
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHH
RYSIGYRAFSLGNSILRKDRMIVSAQRQLEMVASNHELNGYLGRRHGNQAVYLLCVQSVG
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCEEEEEEECCCC
PIAIRNSPGELAFLHSTAMGKVLLAALDDAEAEAILREKPLPKMTPATITDPDVIIKQVR
CEEEECCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
EAREAGYASVVEETILGVISVGAPVRNASGEVQAAMSVAFAERSSPHLTIDNVAPIVVAA
HHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCEEEEH
ADTVSRDLGWSPG
HHHHHHCCCCCCC
>Mature Secondary Structure 
TNSQSLERALQILDLLDRANEPMGIREIARHIGLSNAIVQRLVNTFLEHGFVEQDRISR
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHH
RYSIGYRAFSLGNSILRKDRMIVSAQRQLEMVASNHELNGYLGRRHGNQAVYLLCVQSVG
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCEEEEEEECCCC
PIAIRNSPGELAFLHSTAMGKVLLAALDDAEAEAILREKPLPKMTPATITDPDVIIKQVR
CEEEECCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
EAREAGYASVVEETILGVISVGAPVRNASGEVQAAMSVAFAERSSPHLTIDNVAPIVVAA
HHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCEEEEH
ADTVSRDLGWSPG
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]