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The map label for this gene is trbF [H]

Identifier: 110634662

GI number: 110634662

Start: 2471318

End: 2472007

Strand: Reverse

Name: trbF [H]

Synonym: Meso_2317

Alternate gene names: 110634662

Gene position: 2472007-2471318 (Counterclockwise)

Preceding gene: 110634663

Following gene: 110634661

Centisome position: 56.02

GC content: 65.8

Gene sequence:

>690_bases
ATGAGCTTCTTCAAACGTCCGGCCACGCACTACGGCAAGACACCCGAACCGGAGACCCCTTATCAGAAGGCTGCCCAGGT
CTGGGACGAACGCATCGGCTCGGCCCGCGTGCAGGCGAAGAACTGGCGGCTCATGGCCTTCGGCTGCCTGCTTCTCTCGG
GCGCCTTTGCAGCCGCGCTCGTCTGGCAGGCGTCGCGCGGGACCGTCGTGCCGTGGGTGGTCGAGGTCGACAATCTGGGC
CAGGCGCAGGCGGTTGCCTCCGCTGCCGCCGACTATCGGCCCACAGATCCGCAGGTCGCGTGGCACCTGGCGCGTTTCAT
CGAGCACGTCCGCTCGATCCCCGCCGACGCCGTCATCGTGCGCCGGAACTGGCTTCGTGCCTACGAATTCACGACTGACC
GCGGCGCGGCAGCACTCAACGACTATGCCCGCGGCAACGACCCATTCACCAAGGTCGGCAAGAGCCAAGTCGCTGTCGAG
GTGTCGAGCGTCATCCGCGCCTCGCCGGATTCCTTCCGCGTCGCCTGGACGGAACGCCACTATGAGAACGGCCAGCTTTC
CAAGACCGAGCGGTGGACAGCCATCCTCACCATCGTCGTGCAGCCACCACGTGACGCCGAACGGCTCCGGACGAACCCGC
TCGGCATCTATGTCAACGCCATCAACTGGTCGCGGGAGTTGGAGCAATGA

Upstream 100 bases:

>100_bases
GGGCGGTGAGCCACGGCATCACGGCCGCCGCGCACGCCGTCCGCTCCGGCGACAGCCAAGGCGGCGGCTCTTCCGTCAAC
CTCTCCGAAGGCGACAAGAA

Downstream 100 bases:

>100_bases
CAGCTGATTTCCGCAAAGGCGCAATCGCGGCAACGCTGGTCTCCGCAACCATGCTCGCCGGCTGCGCGACGAAGCGGCCG
CCGCAGATGAGCTTCGACGC

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MSFFKRPATHYGKTPEPETPYQKAAQVWDERIGSARVQAKNWRLMAFGCLLLSGAFAAALVWQASRGTVVPWVVEVDNLG
QAQAVASAAADYRPTDPQVAWHLARFIEHVRSIPADAVIVRRNWLRAYEFTTDRGAAALNDYARGNDPFTKVGKSQVAVE
VSSVIRASPDSFRVAWTERHYENGQLSKTERWTAILTIVVQPPRDAERLRTNPLGIYVNAINWSRELEQ

Sequences:

>Translated_229_residues
MSFFKRPATHYGKTPEPETPYQKAAQVWDERIGSARVQAKNWRLMAFGCLLLSGAFAAALVWQASRGTVVPWVVEVDNLG
QAQAVASAAADYRPTDPQVAWHLARFIEHVRSIPADAVIVRRNWLRAYEFTTDRGAAALNDYARGNDPFTKVGKSQVAVE
VSSVIRASPDSFRVAWTERHYENGQLSKTERWTAILTIVVQPPRDAERLRTNPLGIYVNAINWSRELEQ
>Mature_228_residues
SFFKRPATHYGKTPEPETPYQKAAQVWDERIGSARVQAKNWRLMAFGCLLLSGAFAAALVWQASRGTVVPWVVEVDNLGQ
AQAVASAAADYRPTDPQVAWHLARFIEHVRSIPADAVIVRRNWLRAYEFTTDRGAAALNDYARGNDPFTKVGKSQVAVEV
SSVIRASPDSFRVAWTERHYENGQLSKTERWTAILTIVVQPPRDAERLRTNPLGIYVNAINWSRELEQ

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 25765; Mature: 25634

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFFKRPATHYGKTPEPETPYQKAAQVWDERIGSARVQAKNWRLMAFGCLLLSGAFAAAL
CCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHH
VWQASRGTVVPWVVEVDNLGQAQAVASAAADYRPTDPQVAWHLARFIEHVRSIPADAVIV
HHCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
RRNWLRAYEFTTDRGAAALNDYARGNDPFTKVGKSQVAVEVSSVIRASPDSFRVAWTERH
HHHHHHHHEECCCCCCHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHCCCCCEEEEEEECC
YENGQLSKTERWTAILTIVVQPPRDAERLRTNPLGIYVNAINWSRELEQ
CCCCCCCCHHHEEEEEEEEEECCCCHHHHCCCCCEEEEEEECCHHHCCC
>Mature Secondary Structure 
SFFKRPATHYGKTPEPETPYQKAAQVWDERIGSARVQAKNWRLMAFGCLLLSGAFAAAL
CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHH
VWQASRGTVVPWVVEVDNLGQAQAVASAAADYRPTDPQVAWHLARFIEHVRSIPADAVIV
HHCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
RRNWLRAYEFTTDRGAAALNDYARGNDPFTKVGKSQVAVEVSSVIRASPDSFRVAWTERH
HHHHHHHHEECCCCCCHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHCCCCCEEEEEEECC
YENGQLSKTERWTAILTIVVQPPRDAERLRTNPLGIYVNAINWSRELEQ
CCCCCCCCHHHEEEEEEEEEECCCCHHHHCCCCCEEEEEEECCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]