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The map label for this gene is rhiR [H]

Identifier: 110634656

GI number: 110634656

Start: 2466489

End: 2467286

Strand: Direct

Name: rhiR [H]

Synonym: Meso_2311

Alternate gene names: 110634656

Gene position: 2466489-2467286 (Clockwise)

Preceding gene: 110634655

Following gene: 110634657

Centisome position: 55.9

GC content: 58.02

Gene sequence:

>798_bases
ATGCGAAGCCGACACTACGGGTATGACAAAGGACAAAGCTCCCATTCGGGGCACCGCAGCGCACGATGGCGCTTTCGTCT
AGAAGAGACCTTTTGCTTTACGGAAGCAATGAGAGGCTGTCGTACGACCGAGGAAGTTAATCATAGCCTGATGATTTTCC
TTCAACGCTACGGAGTCACAAGCTTGATTGCGGGGATGATCCCGCCATCGAATTCGTCAAGGCGGGAGCAGTTGTCATAC
GTTCTCCTCGATGGTTGGCCGGAGGAATGGAAACGCCGATACTTTTCACTAGGCTACCTTCACCGGGATCCGGCTATACA
TCTTGTTCGGCGAGGATGTCCTCATTTCCACTGGAGTGAGATACGGGAACACTGCTCTGTCTGCCCCATAGGCCGGCGGA
TCATGAACGAGGCCCGGGAATTCCAACTTCGCGCAGGAGTCACCTTTTCCTTTCCGACGCTGGAGAGCAAGACATTCGGG
TTCTTAGTGGCCGCGGAAGAACTCGACCTCGCTGAAACCGATCTGTTCACATTGCAGTTCGTGGCCGCATTCGGGCTTGG
CTGCGCTCTTACACTGGCCGGCGGAGTGGTTGGCCGCAGCAACGTCCATCTCTCGCGTCGGCAACGCGAGGTCGTGGCTT
GGGCCTCCGAGGGACTTACTGCCGACGAGATCGCCGAACGGCTGAACGTCAGCGTCCATACCGCCGACATGCATTTGCGG
GCCGTCCGCACAAGGCTGGGAGTGGCGAACACGGTGCACGCCGTCGCCGAGGCGTTGCGGCTCGGGCTGATTTCCTGA

Upstream 100 bases:

>100_bases
GAGATCTACTTCGATTTCATTATCGCCCAGAAATACCTTCGCAAATATCAAAGTCCTTCAAAAGGTGCAGGTGAGCACTC
TAAAGGAAGTCCAAGGCAGC

Downstream 100 bases:

>100_bases
TTACCTACGGATTTCCGTAATTCCTGAAAGCGTGCCAATAAAAACATCATTGGTTGACTCGAAACCTGGAGGCCAACCGA
TGCTTCTTATCATAAACTCA

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MRSRHYGYDKGQSSHSGHRSARWRFRLEETFCFTEAMRGCRTTEEVNHSLMIFLQRYGVTSLIAGMIPPSNSSRREQLSY
VLLDGWPEEWKRRYFSLGYLHRDPAIHLVRRGCPHFHWSEIREHCSVCPIGRRIMNEAREFQLRAGVTFSFPTLESKTFG
FLVAAEELDLAETDLFTLQFVAAFGLGCALTLAGGVVGRSNVHLSRRQREVVAWASEGLTADEIAERLNVSVHTADMHLR
AVRTRLGVANTVHAVAEALRLGLIS

Sequences:

>Translated_265_residues
MRSRHYGYDKGQSSHSGHRSARWRFRLEETFCFTEAMRGCRTTEEVNHSLMIFLQRYGVTSLIAGMIPPSNSSRREQLSY
VLLDGWPEEWKRRYFSLGYLHRDPAIHLVRRGCPHFHWSEIREHCSVCPIGRRIMNEAREFQLRAGVTFSFPTLESKTFG
FLVAAEELDLAETDLFTLQFVAAFGLGCALTLAGGVVGRSNVHLSRRQREVVAWASEGLTADEIAERLNVSVHTADMHLR
AVRTRLGVANTVHAVAEALRLGLIS
>Mature_265_residues
MRSRHYGYDKGQSSHSGHRSARWRFRLEETFCFTEAMRGCRTTEEVNHSLMIFLQRYGVTSLIAGMIPPSNSSRREQLSY
VLLDGWPEEWKRRYFSLGYLHRDPAIHLVRRGCPHFHWSEIREHCSVCPIGRRIMNEAREFQLRAGVTFSFPTLESKTFG
FLVAAEELDLAETDLFTLQFVAAFGLGCALTLAGGVVGRSNVHLSRRQREVVAWASEGLTADEIAERLNVSVHTADMHLR
AVRTRLGVANTVHAVAEALRLGLIS

Specific function: Positive regulator of the rhiABC operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=230, Percent_Identity=24.3478260869565, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 30090; Mature: 30090

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSRHYGYDKGQSSHSGHRSARWRFRLEETFCFTEAMRGCRTTEEVNHSLMIFLQRYGVT
CCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHH
SLIAGMIPPSNSSRREQLSYVLLDGWPEEWKRRYFSLGYLHRDPAIHLVRRGCPHFHWSE
HHHHHCCCCCCCCHHHHHEEEEECCCCHHHHHHHHHHCCEECCHHHHHHHCCCCCCCHHH
IREHCSVCPIGRRIMNEAREFQLRAGVTFSFPTLESKTFGFLVAAEELDLAETDLFTLQF
HHHHCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHH
VAAFGLGCALTLAGGVVGRSNVHLSRRQREVVAWASEGLTADEIAERLNVSVHTADMHLR
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEEHHHHHH
AVRTRLGVANTVHAVAEALRLGLIS
HHHHHHCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRSRHYGYDKGQSSHSGHRSARWRFRLEETFCFTEAMRGCRTTEEVNHSLMIFLQRYGVT
CCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHH
SLIAGMIPPSNSSRREQLSYVLLDGWPEEWKRRYFSLGYLHRDPAIHLVRRGCPHFHWSE
HHHHHCCCCCCCCHHHHHEEEEECCCCHHHHHHHHHHCCEECCHHHHHHHCCCCCCCHHH
IREHCSVCPIGRRIMNEAREFQLRAGVTFSFPTLESKTFGFLVAAEELDLAETDLFTLQF
HHHHCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHH
VAAFGLGCALTLAGGVVGRSNVHLSRRQREVVAWASEGLTADEIAERLNVSVHTADMHLR
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEEHHHHHH
AVRTRLGVANTVHAVAEALRLGLIS
HHHHHHCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]