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The map label for this gene is ypdF [C]

Identifier: 110634502

GI number: 110634502

Start: 2304104

End: 2305255

Strand: Direct

Name: ypdF [C]

Synonym: Meso_2153

Alternate gene names: 110634502

Gene position: 2304104-2305255 (Clockwise)

Preceding gene: 110634501

Following gene: 110634503

Centisome position: 52.22

GC content: 58.85

Gene sequence:

>1152_bases
ATGGCCTTGCATTTCGAACGTGCCGAATTCGACGCACGCCGCGACAGGCTGCTCATAGAAATGTCGGAACGCAAACTGGA
TGCCATGCTGCTCTTCGCCCAGGACAGCATGTATTGGCTGACCGGCTATGACACATTCGGCTTCTGCTTCTTCCAATGCC
TGGTGGTGAAAGCCGACGGCTCGATGGTTCTGCTCACGCGTTCTGCCGATCTGCGTCAGGCGCGGCATACATCCATCATC
GACAATATCATCGTTTGGAACGATCGTTACGGCGCCAACCCCGCACTCGATCTGCGGAACCTCCTGAACGACCTCGACCT
GCTCGGCATGCGAATCGGTGTGGAATATGACACGCACGGGCTGACCGCCAGGAACGGCAAGCTTTTAGATGAGCAGCTCC
AGACCTTTGCCAAGATCGAGGATGCGTCCGACCTCGTGCCCCGGCTGCGTCTGTTGAAAAGCCCGGCTGAAATCGAAAAG
GTAAGGGACGCTGCAAGGCTGGCCGACGAGGCTCTGGATGCCGCGGCTCCGCTGATCAAGCAGGGCGGCGACGAGGCGGC
TATCCTTGCCGCGATGCAAGGTGCGATCCTGGCGGGCGGCGGGGATTATCCCGGGAATGAATTCGTCATCGGCTCGGGCG
CCGACGCGCTGCTGTGCCGATATAAAGCCGGGCGAAGGAAACTCGGCAAAAACGACCAGCTGACGCTGGAATGGGCCGGC
GTATATCATCACTACCACGCCGCCATGATGCAGACTGTTCTCACGGGCAAGGCTTCGCGGCGCCATCAGGAGCTTTTCGA
GGCCGCAAAGGCCGCGCTTCTTGCCTGCGAAAAGGTGATGGCGCCGGGAAAAACCTTCGGCGACGTTTTCGATGCCCACG
CGAAGGTAATGGAAGCGCATGATCTGACGCGCCATCGGCTGAATGCCTGTGGATATTCGCTGGGCGCGCGTTTTTCGCCG
TCATGGATGGAACCGCAGATGTTCTACGCGGGCAATCCCGAGCCGATTGCGCCGGACATGACGCTTTTTGCCCACATGAT
CATCATGGACTCCGATTCAGGCACCGCCATGTGCCTGGGGCGCACCTATCTTACAACCGACTCCTCACCGGAAATGCTTT
CTCGCCATGGCCTCGATTTAATCATAAAGTAG

Upstream 100 bases:

>100_bases
ATGCGCAGGAGGACGATTTCTTCTCCTACCGCAGGGCCGCCCACCGCGGCGAACCGGACTACGGACGCCAGATCTCGGCG
ATTTGCCTGGAGGTATCCTG

Downstream 100 bases:

>100_bases
GAGCTGAAAGGGATGGAATGCCTCGGGGGGCTATCATCGCGGGGATAAAAATGGTGCGCGGGAAAACAAGGGCATGGCTT
CTGATGCTCGCGGCTGCAAC

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MALHFERAEFDARRDRLLIEMSERKLDAMLLFAQDSMYWLTGYDTFGFCFFQCLVVKADGSMVLLTRSADLRQARHTSII
DNIIVWNDRYGANPALDLRNLLNDLDLLGMRIGVEYDTHGLTARNGKLLDEQLQTFAKIEDASDLVPRLRLLKSPAEIEK
VRDAARLADEALDAAAPLIKQGGDEAAILAAMQGAILAGGGDYPGNEFVIGSGADALLCRYKAGRRKLGKNDQLTLEWAG
VYHHYHAAMMQTVLTGKASRRHQELFEAAKAALLACEKVMAPGKTFGDVFDAHAKVMEAHDLTRHRLNACGYSLGARFSP
SWMEPQMFYAGNPEPIAPDMTLFAHMIIMDSDSGTAMCLGRTYLTTDSSPEMLSRHGLDLIIK

Sequences:

>Translated_383_residues
MALHFERAEFDARRDRLLIEMSERKLDAMLLFAQDSMYWLTGYDTFGFCFFQCLVVKADGSMVLLTRSADLRQARHTSII
DNIIVWNDRYGANPALDLRNLLNDLDLLGMRIGVEYDTHGLTARNGKLLDEQLQTFAKIEDASDLVPRLRLLKSPAEIEK
VRDAARLADEALDAAAPLIKQGGDEAAILAAMQGAILAGGGDYPGNEFVIGSGADALLCRYKAGRRKLGKNDQLTLEWAG
VYHHYHAAMMQTVLTGKASRRHQELFEAAKAALLACEKVMAPGKTFGDVFDAHAKVMEAHDLTRHRLNACGYSLGARFSP
SWMEPQMFYAGNPEPIAPDMTLFAHMIIMDSDSGTAMCLGRTYLTTDSSPEMLSRHGLDLIIK
>Mature_382_residues
ALHFERAEFDARRDRLLIEMSERKLDAMLLFAQDSMYWLTGYDTFGFCFFQCLVVKADGSMVLLTRSADLRQARHTSIID
NIIVWNDRYGANPALDLRNLLNDLDLLGMRIGVEYDTHGLTARNGKLLDEQLQTFAKIEDASDLVPRLRLLKSPAEIEKV
RDAARLADEALDAAAPLIKQGGDEAAILAAMQGAILAGGGDYPGNEFVIGSGADALLCRYKAGRRKLGKNDQLTLEWAGV
YHHYHAAMMQTVLTGKASRRHQELFEAAKAALLACEKVMAPGKTFGDVFDAHAKVMEAHDLTRHRLNACGYSLGARFSPS
WMEPQMFYAGNPEPIAPDMTLFAHMIIMDSDSGTAMCLGRTYLTTDSSPEMLSRHGLDLIIK

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 42463; Mature: 42332

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALHFERAEFDARRDRLLIEMSERKLDAMLLFAQDSMYWLTGYDTFGFCFFQCLVVKADG
CCCCCCHHHHHHHHCEEEEEEHHCCEEEEEEEECCCEEEEECCCHHHHHHHHHEEEECCC
SMVLLTRSADLRQARHTSIIDNIIVWNDRYGANPALDLRNLLNDLDLLGMRIGVEYDTHG
CEEEEECCCHHHHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCC
LTARNGKLLDEQLQTFAKIEDASDLVPRLRLLKSPAEIEKVRDAARLADEALDAAAPLIK
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QGGDEAAILAAMQGAILAGGGDYPGNEFVIGSGADALLCRYKAGRRKLGKNDQLTLEWAG
CCCCCHHHHHHHCCEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEHH
VYHHYHAAMMQTVLTGKASRRHQELFEAAKAALLACEKVMAPGKTFGDVFDAHAKVMEAH
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
DLTRHRLNACGYSLGARFSPSWMEPQMFYAGNPEPIAPDMTLFAHMIIMDSDSGTAMCLG
HHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHEEEEEEECCCCCEEEEC
RTYLTTDSSPEMLSRHGLDLIIK
CEEEECCCCHHHHHHCCCEEEEC
>Mature Secondary Structure 
ALHFERAEFDARRDRLLIEMSERKLDAMLLFAQDSMYWLTGYDTFGFCFFQCLVVKADG
CCCCCHHHHHHHHCEEEEEEHHCCEEEEEEEECCCEEEEECCCHHHHHHHHHEEEECCC
SMVLLTRSADLRQARHTSIIDNIIVWNDRYGANPALDLRNLLNDLDLLGMRIGVEYDTHG
CEEEEECCCHHHHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCC
LTARNGKLLDEQLQTFAKIEDASDLVPRLRLLKSPAEIEKVRDAARLADEALDAAAPLIK
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QGGDEAAILAAMQGAILAGGGDYPGNEFVIGSGADALLCRYKAGRRKLGKNDQLTLEWAG
CCCCCHHHHHHHCCEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEHH
VYHHYHAAMMQTVLTGKASRRHQELFEAAKAALLACEKVMAPGKTFGDVFDAHAKVMEAH
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
DLTRHRLNACGYSLGARFSPSWMEPQMFYAGNPEPIAPDMTLFAHMIIMDSDSGTAMCLG
HHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHEEEEEEECCCCCEEEEC
RTYLTTDSSPEMLSRHGLDLIIK
CEEEECCCCHHHHHHCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]