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The map label for this gene is ycjD [H]

Identifier: 110634446

GI number: 110634446

Start: 2252041

End: 2252397

Strand: Direct

Name: ycjD [H]

Synonym: Meso_2097

Alternate gene names: 110634446

Gene position: 2252041-2252397 (Clockwise)

Preceding gene: 110634445

Following gene: 110634448

Centisome position: 51.04

GC content: 61.06

Gene sequence:

>357_bases
ATGCGCCAAGCTGTTCCGCCGCCGCACCGCACATATGCCCGCACCATGCGGGCCGACGCGACGAAGGCCGAAAACCTTTT
GTGGCAAGCGCTGCGCAACAAGAAACTCGAAGGCTTAAAATTCAGGCGGCAAGTGCCGCTCGACGGCTACATCCTCGACT
TCGTCTGCTTCGAGGCGCGGCTGATCCTGGAGGTCGATGGCGGGCAGCATTCGGGCGCGATACGAGACGCCGTGCGCGAC
AGGCATTTTGAAGCCCGGGGCTTCAAGACACTGCGCTTCTGGAACGACGAGGTGGAAAAGAACCTCGGCGGCATCTGCCT
CACCATCCTACATGAGGCGAAGGGGAGGATCGTTTAG

Upstream 100 bases:

>100_bases
TCGCCTGCGGCTTGCCTAAGACGTTGAAATCGCTTTCTCTCCCGCAAGGGGAAGAGATATGGGCGCCGGCGCTGTTCTCT
CCCACAGGGGGAGAAATATC

Downstream 100 bases:

>100_bases
AATCCCCCTCTCTTGCAAATTCTAAGGGCTTGGCTTCGCCAAACCCAAGAATTTGCTTTCTCCCCCACAAGGGGGGAGAT
AAGCCCCTGCACAAACGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MRQAVPPPHRTYARTMRADATKAENLLWQALRNKKLEGLKFRRQVPLDGYILDFVCFEARLILEVDGGQHSGAIRDAVRD
RHFEARGFKTLRFWNDEVEKNLGGICLTILHEAKGRIV

Sequences:

>Translated_118_residues
MRQAVPPPHRTYARTMRADATKAENLLWQALRNKKLEGLKFRRQVPLDGYILDFVCFEARLILEVDGGQHSGAIRDAVRD
RHFEARGFKTLRFWNDEVEKNLGGICLTILHEAKGRIV
>Mature_118_residues
MRQAVPPPHRTYARTMRADATKAENLLWQALRNKKLEGLKFRRQVPLDGYILDFVCFEARLILEVDGGQHSGAIRDAVRD
RHFEARGFKTLRFWNDEVEKNLGGICLTILHEAKGRIV

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=108, Percent_Identity=41.6666666666667, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 13629; Mature: 13629

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQAVPPPHRTYARTMRADATKAENLLWQALRNKKLEGLKFRRQVPLDGYILDFVCFEAR
CCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHCCE
LILEVDGGQHSGAIRDAVRDRHFEARGFKTLRFWNDEVEKNLGGICLTILHEAKGRIV
EEEEECCCCCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRQAVPPPHRTYARTMRADATKAENLLWQALRNKKLEGLKFRRQVPLDGYILDFVCFEAR
CCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHCCE
LILEVDGGQHSGAIRDAVRDRHFEARGFKTLRFWNDEVEKNLGGICLTILHEAKGRIV
EEEEECCCCCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]