Click here to switch to the map view.

The map label for this gene is yjhH [C]

Identifier: 110634297

GI number: 110634297

Start: 2087293

End: 2088198

Strand: Reverse

Name: yjhH [C]

Synonym: Meso_1947

Alternate gene names: 110634297

Gene position: 2088198-2087293 (Counterclockwise)

Preceding gene: 110634298

Following gene: 110634296

Centisome position: 47.33

GC content: 64.02

Gene sequence:

>906_bases
ATGGAACCCCAGGATCTCAAGACGGTGCTCGGAGCGGGACTGCTCTCCTTTCCGGTCACCCCTTTCGGACCCGACGGCGG
GTTCAACGAAGCCGTCTATCGCGAGCATGTCGGCTGGCTCGCCAGCTTCGAGGCTGCCGCGCTGTTTGCCGCGGGCGGTA
CCGGCGAATTCTTCTCGCTGGCCCCCGATGAAATCCCCGCCATCGTGCGCGCCGCCAAGGCGGCGGCGGGCAATACCCCG
ATCATTTCGGGCTGCGGCCATGGCACCGAGGTCGCCATCTCTATCGCCAAGGCGGCCGAAAAGGCCGGCGCCGACGGCAT
CCTGCTCCTGCCGCATTACCTGATAGACGCACCCCAGGCCGGCCTCTACAACCACATCAAGCGCGTCTGCGACTCCATAG
GCATCGGTGTCATGGTCTATAACCGTGACAATTCGATCCTGCAGGCCGATACGCTCAAGCGCCTCTGCGACGTCTGCCCC
AATCTCGTCGGCTTCAAGGACGGATCGGGCGAACTCGGCTTGGTCCGGCAGATCTCCGCCACCATGGGGGACCGCCTCAC
CTATCTGGGCGGCATGCCCACCGCGGAATTGTTCGCCGAGGCCTATCTGGCGGCCGGCTTCACCACCTATTCCTCGGCCG
TGTTCAATTTCGTCCCGGAGCTGGCCGTCCGCTTCTATAAGGCCCTGCGCGCCGGCCGCCGTGCCGAATGCGAGACGCTC
CTCAAGGATTTCTTCTATCCATTCATGGCCATACGCAATCGCAGCAAGGGCTATGCCGTGGCCGCGATCAAGGCGGGCGT
GCGCCTGCGCGGCTATGATGCAGGCCCGGTCCGCTCGCCGCTCGTCGATCTCACGTCCGAAGAGATGGATATGATGGCCT
CATTGATGGCTTCGGTCGACCGATGA

Upstream 100 bases:

>100_bases
AACGACATGGCGTAACTTGTCATATCTCTATTGACGCTTATCCTATAAATTTGCTAGTGCCCGAACTACTGCGGACGCAC
AACAGATAAAGGATGGCGGA

Downstream 100 bases:

>100_bases
AGATCACTGCCGTCCGCACGCATCTGCTCGATCACGAACTGGCGACGCCGTTCGCCAGCGCGACGATGCGGTTCGGGCGG
CGGACCCATGTGCTGGTGGA

Product: 5-dehydro-4-deoxyglucarate dehydratase

Products: NA

Alternate protein names: 5-keto-4-deoxy-glucarate dehydratase; KDGDH

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MEPQDLKTVLGAGLLSFPVTPFGPDGGFNEAVYREHVGWLASFEAAALFAAGGTGEFFSLAPDEIPAIVRAAKAAAGNTP
IISGCGHGTEVAISIAKAAEKAGADGILLLPHYLIDAPQAGLYNHIKRVCDSIGIGVMVYNRDNSILQADTLKRLCDVCP
NLVGFKDGSGELGLVRQISATMGDRLTYLGGMPTAELFAEAYLAAGFTTYSSAVFNFVPELAVRFYKALRAGRRAECETL
LKDFFYPFMAIRNRSKGYAVAAIKAGVRLRGYDAGPVRSPLVDLTSEEMDMMASLMASVDR

Sequences:

>Translated_301_residues
MEPQDLKTVLGAGLLSFPVTPFGPDGGFNEAVYREHVGWLASFEAAALFAAGGTGEFFSLAPDEIPAIVRAAKAAAGNTP
IISGCGHGTEVAISIAKAAEKAGADGILLLPHYLIDAPQAGLYNHIKRVCDSIGIGVMVYNRDNSILQADTLKRLCDVCP
NLVGFKDGSGELGLVRQISATMGDRLTYLGGMPTAELFAEAYLAAGFTTYSSAVFNFVPELAVRFYKALRAGRRAECETL
LKDFFYPFMAIRNRSKGYAVAAIKAGVRLRGYDAGPVRSPLVDLTSEEMDMMASLMASVDR
>Mature_301_residues
MEPQDLKTVLGAGLLSFPVTPFGPDGGFNEAVYREHVGWLASFEAAALFAAGGTGEFFSLAPDEIPAIVRAAKAAAGNTP
IISGCGHGTEVAISIAKAAEKAGADGILLLPHYLIDAPQAGLYNHIKRVCDSIGIGVMVYNRDNSILQADTLKRLCDVCP
NLVGFKDGSGELGLVRQISATMGDRLTYLGGMPTAELFAEAYLAAGFTTYSSAVFNFVPELAVRFYKALRAGRRAECETL
LKDFFYPFMAIRNRSKGYAVAAIKAGVRLRGYDAGPVRSPLVDLTSEEMDMMASLMASVDR

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family

Homologues:

Organism=Escherichia coli, GI87082415, Length=243, Percent_Identity=27.9835390946502, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788823, Length=178, Percent_Identity=29.7752808988764, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786463, Length=249, Percent_Identity=29.3172690763052, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDGD_MESSB (Q11GY5)

Other databases:

- EMBL:   CP000390
- RefSeq:   YP_674505.1
- ProteinModelPortal:   Q11GY5
- STRING:   Q11GY5
- GeneID:   4182514
- GenomeReviews:   CP000390_GR
- KEGG:   mes:Meso_1947
- NMPDR:   fig|266779.1.peg.542
- eggNOG:   COG0329
- HOGENOM:   HBG358848
- OMA:   LPHYLID
- ProtClustDB:   PRK03620
- BioCyc:   MSP266779:MESO_1947-MONOMER
- HAMAP:   MF_00694
- InterPro:   IPR013785
- InterPro:   IPR017655
- InterPro:   IPR002220
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR12128
- TIGRFAMs:   TIGR03249

Pfam domain/function: PF00701 DHDPS

EC number: =4.2.1.41

Molecular weight: Translated: 32061; Mature: 32061

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPQDLKTVLGAGLLSFPVTPFGPDGGFNEAVYREHVGWLASFEAAALFAAGGTGEFFSL
CCHHHHHHHHHCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCC
APDEIPAIVRAAKAAAGNTPIISGCGHGTEVAISIAKAAEKAGADGILLLPHYLIDAPQA
CCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCHHHHCCCCC
GLYNHIKRVCDSIGIGVMVYNRDNSILQADTLKRLCDVCPNLVGFKDGSGELGLVRQISA
HHHHHHHHHHHHCCCEEEEEECCCCEEHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHH
TMGDRLTYLGGMPTAELFAEAYLAAGFTTYSSAVFNFVPELAVRFYKALRAGRRAECETL
HHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LKDFFYPFMAIRNRSKGYAVAAIKAGVRLRGYDAGPVRSPLVDLTSEEMDMMASLMASVD
HHHHHHHHHHHHCCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
R
C
>Mature Secondary Structure
MEPQDLKTVLGAGLLSFPVTPFGPDGGFNEAVYREHVGWLASFEAAALFAAGGTGEFFSL
CCHHHHHHHHHCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCC
APDEIPAIVRAAKAAAGNTPIISGCGHGTEVAISIAKAAEKAGADGILLLPHYLIDAPQA
CCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCHHHHCCCCC
GLYNHIKRVCDSIGIGVMVYNRDNSILQADTLKRLCDVCPNLVGFKDGSGELGLVRQISA
HHHHHHHHHHHHCCCEEEEEECCCCEEHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHH
TMGDRLTYLGGMPTAELFAEAYLAAGFTTYSSAVFNFVPELAVRFYKALRAGRRAECETL
HHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LKDFFYPFMAIRNRSKGYAVAAIKAGVRLRGYDAGPVRSPLVDLTSEEMDMMASLMASVD
HHHHHHHHHHHHCCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA