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The map label for this gene is cspA [H]

Identifier: 110634259

GI number: 110634259

Start: 2046638

End: 2046847

Strand: Reverse

Name: cspA [H]

Synonym: Meso_1909

Alternate gene names: 110634259

Gene position: 2046847-2046638 (Counterclockwise)

Preceding gene: 110634260

Following gene: 110634252

Centisome position: 46.39

GC content: 59.05

Gene sequence:

>210_bases
ATGACCACCGGAACCGTCAAGTGGTTCAACGCCACCAAGGGATTTGGTTTTATTCAGCCGGACAGCGGGCAGCCTGATGT
GTTCGTACACATTTCGGCCGTCGAGCAGGCGGGGATGCGCAGCCTTGTTGAAGGGCAGAAGATCGACTTCGAAGTCGTGC
GTGACCCGAAGTCGGGCAAGTCGGCCGCAGCGAACCTGCAGGCGGTCTAA

Upstream 100 bases:

>100_bases
TATCGCGCAAACCAACGCGTTCAACGATCTTCCTCTCAACATCGATTTATGAGCCGGCCGCATCGCGCGGCGCGGAAAAC
GATTTGAAAGGAAAATCGCC

Downstream 100 bases:

>100_bases
CTTGGTCTCCGGCCTTTGACCACGGATGTACTGGCATTGGCCGTCGAGGCGCAAGGAAAGGCCGGGTTCTTCCCGGCCTT
TTTAGTTTTCAGCACGGAGC

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MTTGTVKWFNATKGFGFIQPDSGQPDVFVHISAVEQAGMRSLVEGQKIDFEVVRDPKSGKSAAANLQAV

Sequences:

>Translated_69_residues
MTTGTVKWFNATKGFGFIQPDSGQPDVFVHISAVEQAGMRSLVEGQKIDFEVVRDPKSGKSAAANLQAV
>Mature_68_residues
TTGTVKWFNATKGFGFIQPDSGQPDVFVHISAVEQAGMRSLVEGQKIDFEVVRDPKSGKSAAANLQAV

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=53.7313432835821, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=50, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=54.6875, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=51.5151515151515, Blast_Score=69, Evalue=4e-14,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=51.5625, Blast_Score=69, Evalue=6e-14,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=46.7741935483871, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1787834, Length=55, Percent_Identity=50.9090909090909, Blast_Score=65, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7396; Mature: 7265

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTGTVKWFNATKGFGFIQPDSGQPDVFVHISAVEQAGMRSLVEGQKIDFEVVRDPKSGK
CCCCCEEEEECCCCCEEECCCCCCCCEEEEEECCCHHHHHHHHCCCCCCEEEEECCCCCC
SAAANLQAV
CCCCEEECC
>Mature Secondary Structure 
TTGTVKWFNATKGFGFIQPDSGQPDVFVHISAVEQAGMRSLVEGQKIDFEVVRDPKSGK
CCCCEEEEECCCCCEEECCCCCCCCEEEEEECCCHHHHHHHHCCCCCCEEEEECCCCCC
SAAANLQAV
CCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10618253; 11481430 [H]