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The map label for this gene is ymfN [H]

Identifier: 110634235

GI number: 110634235

Start: 2025874

End: 2027559

Strand: Reverse

Name: ymfN [H]

Synonym: Meso_1885

Alternate gene names: 110634235

Gene position: 2027559-2025874 (Counterclockwise)

Preceding gene: 110634236

Following gene: 110634234

Centisome position: 45.95

GC content: 59.55

Gene sequence:

>1686_bases
TTGCAACCCGTTGCAAAATCCGAACCGATGATCAGGAGGCGCACCCGCCCGTTGCAACCGGTTGCAAATTCCTTCCCTGA
TATCCCCGACCCGTTCGGCTACGGGCAGCGGGCCGTTGATTTCCTTCGATCCCTAAAGCACCCGAAATCCCGCCTTCCAA
ATAAGGCATTCCAGCTTGACCCCTGGCAGGAAGAAATCGTCCGCGTGATCTACGGCCCGTGCGATGAACACGGCAATCGT
ATCGTTTCCGATGTTGTGATCCTGATCGGCAGGGGCAACCGCAAGACCTCGCTCGGCGCGGCTCTTTCCTTGCTTCACAC
CCACGGACCGGAGGCCGTGCCGGGCGGCGAAGCCATCTTCGCGGCCGGCGACAAAAAGCAGGCCCGTATTGCCTATCAGG
AAGCCCTTGGCATTCTCCACGCCGGAGACGCAGACCTATGGAAGAAGGGGCAGGCGAACCGGGCAACCGACCCGACGAAG
ACCATCCGCATTCAGGATTACCGGAACACGATCCAGTTTCCGAACGGCTCTTTTCTCGAAGCCATATCGAACGATCACGG
CACCCAGCACGGGCGAACGCCGGCCTTTGCCCTTTGCGATGAATTGCACGCATGGGCGCGGCGCGATCTTTGGGACGTTA
TCGACACGGGCTTGACGAAGACCGCCAACAGCCTTCGCGTCACCATCACCACGGCAGGCCGGGGCCAGGATACTATCGGT
CATGAAGTGATCGAACGTGCCCGCAAGATCGCGCGCGGCAAGATCATAGAACCCAGCACCTTAGCTTTTCTCTTTGAAGT
GCCCGCCGAAGCGGATTGGCGCGACGAAAGCCTATGGCCGCTCGCCAATCCGGGCATCCCTCACGGTTATCCGCCGCTCG
ACAAGCTCCGCCAGAAAGCCCGCGTTGCCGAAGACAGCCCCGGCGCGCGTGACGCCTTCAAAATGCTGCACCTCAATATG
TGGCTCGACCGCAGCACGTCGCCCTTTGTCGAAATGTCGATTTACGACCGGGGCAATAAGCCTATCAACGTTGAAGCCCT
TGCCGGCCTGCCGTGCTGGATAGGCGTGGACCTTGGCATGACGGATGACCTTTCCGCCGTTGTCGCTGCCTTCCGCGACC
CCGACCTTGACGAAGGTTATATCGTCCTTCCGTTCTTTTTCATGCCCGCCGACAATGTGGAAAAGCGGCAGACGCAATCG
GGCTTCCCCTATGCCGAGCATGTAGCCGAAGGCCGGATTACCACCACGACCGGGAACGTCACCGATTACCGCGTGATTGA
AGACGCCATCCGCGATCTTTGCGAAACCTATCAGGTGCGGGAAATCGCCTTCGATCCGCACTATGCCGGGATGCTCATGA
ACAACCTGCTTGAAGACGGCTATCCCGCCGTTTCCTTCCGGCAAGGCTGGGTCACCATGGGTCCGGCCATCAAAGAGCTT
GAACGGGCAATCCTCGCCGGGCGCTTCCGCCACGGCGGTCATCCCGTGTTGCGATGGAACTTCGCCAACATCGCTATTCA
GGACGACGGTAAGGGCAACAAGTCTTTCAACAAGGCCAAGTCCACCGAAAAGATTGACGGGGCCGTAGCAACAGCCATGG
CCGTTGCCCGTGCCGCTGCCGGCGAAGGCGATGTACGTTCGATTTTCGATGACCCGAAGGTCACCGCTCAAGACCTTGTG
TGGTGA

Upstream 100 bases:

>100_bases
GGTTTCCTATGGCGGCAAGACCTATGACTTGAAAGAGGTGAAGGAGATCGGCAGGCGGCGCGGTCTCGACCTTCGCGCGA
CGGCGGCGGAGGGCTGAAAA

Downstream 100 bases:

>100_bases
ATTTTGCAACGGGTTTCAAATCTGAGGTAATCCCATGGCAACCGAAGAAGAACGCCTTATCGTCTCGCTTGAAGCGAGGA
TGAACCAATTTGAGAAGAAT

Product: phage terminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 561; Mature: 561

Protein sequence:

>561_residues
MQPVAKSEPMIRRRTRPLQPVANSFPDIPDPFGYGQRAVDFLRSLKHPKSRLPNKAFQLDPWQEEIVRVIYGPCDEHGNR
IVSDVVILIGRGNRKTSLGAALSLLHTHGPEAVPGGEAIFAAGDKKQARIAYQEALGILHAGDADLWKKGQANRATDPTK
TIRIQDYRNTIQFPNGSFLEAISNDHGTQHGRTPAFALCDELHAWARRDLWDVIDTGLTKTANSLRVTITTAGRGQDTIG
HEVIERARKIARGKIIEPSTLAFLFEVPAEADWRDESLWPLANPGIPHGYPPLDKLRQKARVAEDSPGARDAFKMLHLNM
WLDRSTSPFVEMSIYDRGNKPINVEALAGLPCWIGVDLGMTDDLSAVVAAFRDPDLDEGYIVLPFFFMPADNVEKRQTQS
GFPYAEHVAEGRITTTTGNVTDYRVIEDAIRDLCETYQVREIAFDPHYAGMLMNNLLEDGYPAVSFRQGWVTMGPAIKEL
ERAILAGRFRHGGHPVLRWNFANIAIQDDGKGNKSFNKAKSTEKIDGAVATAMAVARAAAGEGDVRSIFDDPKVTAQDLV
W

Sequences:

>Translated_561_residues
MQPVAKSEPMIRRRTRPLQPVANSFPDIPDPFGYGQRAVDFLRSLKHPKSRLPNKAFQLDPWQEEIVRVIYGPCDEHGNR
IVSDVVILIGRGNRKTSLGAALSLLHTHGPEAVPGGEAIFAAGDKKQARIAYQEALGILHAGDADLWKKGQANRATDPTK
TIRIQDYRNTIQFPNGSFLEAISNDHGTQHGRTPAFALCDELHAWARRDLWDVIDTGLTKTANSLRVTITTAGRGQDTIG
HEVIERARKIARGKIIEPSTLAFLFEVPAEADWRDESLWPLANPGIPHGYPPLDKLRQKARVAEDSPGARDAFKMLHLNM
WLDRSTSPFVEMSIYDRGNKPINVEALAGLPCWIGVDLGMTDDLSAVVAAFRDPDLDEGYIVLPFFFMPADNVEKRQTQS
GFPYAEHVAEGRITTTTGNVTDYRVIEDAIRDLCETYQVREIAFDPHYAGMLMNNLLEDGYPAVSFRQGWVTMGPAIKEL
ERAILAGRFRHGGHPVLRWNFANIAIQDDGKGNKSFNKAKSTEKIDGAVATAMAVARAAAGEGDVRSIFDDPKVTAQDLV
W
>Mature_561_residues
MQPVAKSEPMIRRRTRPLQPVANSFPDIPDPFGYGQRAVDFLRSLKHPKSRLPNKAFQLDPWQEEIVRVIYGPCDEHGNR
IVSDVVILIGRGNRKTSLGAALSLLHTHGPEAVPGGEAIFAAGDKKQARIAYQEALGILHAGDADLWKKGQANRATDPTK
TIRIQDYRNTIQFPNGSFLEAISNDHGTQHGRTPAFALCDELHAWARRDLWDVIDTGLTKTANSLRVTITTAGRGQDTIG
HEVIERARKIARGKIIEPSTLAFLFEVPAEADWRDESLWPLANPGIPHGYPPLDKLRQKARVAEDSPGARDAFKMLHLNM
WLDRSTSPFVEMSIYDRGNKPINVEALAGLPCWIGVDLGMTDDLSAVVAAFRDPDLDEGYIVLPFFFMPADNVEKRQTQS
GFPYAEHVAEGRITTTTGNVTDYRVIEDAIRDLCETYQVREIAFDPHYAGMLMNNLLEDGYPAVSFRQGWVTMGPAIKEL
ERAILAGRFRHGGHPVLRWNFANIAIQDDGKGNKSFNKAKSTEKIDGAVATAMAVARAAAGEGDVRSIFDDPKVTAQDLV
W

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 62186; Mature: 62186

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPVAKSEPMIRRRTRPLQPVANSFPDIPDPFGYGQRAVDFLRSLKHPKSRLPNKAFQLD
CCCCCCCCCHHHHCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCC
PWQEEIVRVIYGPCDEHGNRIVSDVVILIGRGNRKTSLGAALSLLHTHGPEAVPGGEAIF
CHHHHHHHHHHCCCHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEE
AAGDKKQARIAYQEALGILHAGDADLWKKGQANRATDPTKTIRIQDYRNTIQFPNGSFLE
ECCCCHHHHHHHHHHHHHEECCCHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHH
AISNDHGTQHGRTPAFALCDELHAWARRDLWDVIDTGLTKTANSLRVTITTAGRGQDTIG
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEEEEEECCCCCCHHH
HEVIERARKIARGKIIEPSTLAFLFEVPAEADWRDESLWPLANPGIPHGYPPLDKLRQKA
HHHHHHHHHHHCCCCCCCHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
RVAEDSPGARDAFKMLHLNMWLDRSTSPFVEMSIYDRGNKPINVEALAGLPCWIGVDLGM
HCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCC
TDDLSAVVAAFRDPDLDEGYIVLPFFFMPADNVEKRQTQSGFPYAEHVAEGRITTTTGNV
CCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCHHHHHCCCEEEEECCCC
TDYRVIEDAIRDLCETYQVREIAFDPHYAGMLMNNLLEDGYPAVSFRQGWVTMGPAIKEL
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCEECCHHHHHH
ERAILAGRFRHGGHPVLRWNFANIAIQDDGKGNKSFNKAKSTEKIDGAVATAMAVARAAA
HHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHC
GEGDVRSIFDDPKVTAQDLVW
CCCCHHHHCCCCCCCHHHCCC
>Mature Secondary Structure
MQPVAKSEPMIRRRTRPLQPVANSFPDIPDPFGYGQRAVDFLRSLKHPKSRLPNKAFQLD
CCCCCCCCCHHHHCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCC
PWQEEIVRVIYGPCDEHGNRIVSDVVILIGRGNRKTSLGAALSLLHTHGPEAVPGGEAIF
CHHHHHHHHHHCCCHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEE
AAGDKKQARIAYQEALGILHAGDADLWKKGQANRATDPTKTIRIQDYRNTIQFPNGSFLE
ECCCCHHHHHHHHHHHHHEECCCHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHH
AISNDHGTQHGRTPAFALCDELHAWARRDLWDVIDTGLTKTANSLRVTITTAGRGQDTIG
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEEEEEECCCCCCHHH
HEVIERARKIARGKIIEPSTLAFLFEVPAEADWRDESLWPLANPGIPHGYPPLDKLRQKA
HHHHHHHHHHHCCCCCCCHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
RVAEDSPGARDAFKMLHLNMWLDRSTSPFVEMSIYDRGNKPINVEALAGLPCWIGVDLGM
HCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCC
TDDLSAVVAAFRDPDLDEGYIVLPFFFMPADNVEKRQTQSGFPYAEHVAEGRITTTTGNV
CCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCHHHHHCCCEEEEECCCC
TDYRVIEDAIRDLCETYQVREIAFDPHYAGMLMNNLLEDGYPAVSFRQGWVTMGPAIKEL
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCEECCHHHHHH
ERAILAGRFRHGGHPVLRWNFANIAIQDDGKGNKSFNKAKSTEKIDGAVATAMAVARAAA
HHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHC
GEGDVRSIFDDPKVTAQDLVW
CCCCHHHHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]