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The map label for this gene is yoaB [C]

Identifier: 110634186

GI number: 110634186

Start: 1972640

End: 1972990

Strand: Reverse

Name: yoaB [C]

Synonym: Meso_1836

Alternate gene names: 110634186

Gene position: 1972990-1972640 (Counterclockwise)

Preceding gene: 110634187

Following gene: 110634185

Centisome position: 44.71

GC content: 57.83

Gene sequence:

>351_bases
ATGATCAAGCGTCACATGCAGACACGCATCAACCATCGGGTGGTCGAGCACAACAGGGTGCTCTATTTTGGCGGCCTTAT
TGCCGATGACCTGAGCGTCGACATGAAGGGCCAGACACAGCAGATCTGCCGCAAGATCGACGAACTGCTGCAAAAGGTGG
GCTCCTCAAAGGCGCATCTGCTCACGGCGATGATCTACATCTCCGATTTCTCGCAGAAGGAAGGAATGAACGAGGCCTGG
CTCGAATGGCTGCCCGGTGAGCTTTTGCCCACCCGTGCGACCATCGGCGTCGCTGACCTCGGCGAAAACGTCCTGATCGA
GGTGGTCGTGTCCGCAGCCAAGACTGCGTAG

Upstream 100 bases:

>100_bases
CGGGCCTGGCGCCGGCTGCGGAGGGCCAGCCCCTGGACTAGGGCCGTGCTGCTGAATCTGCAATTTCCATCAACACCAGC
GAACAATGAAGGAGAAGGTT

Downstream 100 bases:

>100_bases
GAATCCGGGTCCGCCGGTCAATGGCTGCCTGGTCCTACGATGCGGGAATCCAGCCGTGGCTCCATTGACAGGGCGGTCAT
CTCACGAAACTCTGCTTGCC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MIKRHMQTRINHRVVEHNRVLYFGGLIADDLSVDMKGQTQQICRKIDELLQKVGSSKAHLLTAMIYISDFSQKEGMNEAW
LEWLPGELLPTRATIGVADLGENVLIEVVVSAAKTA

Sequences:

>Translated_116_residues
MIKRHMQTRINHRVVEHNRVLYFGGLIADDLSVDMKGQTQQICRKIDELLQKVGSSKAHLLTAMIYISDFSQKEGMNEAW
LEWLPGELLPTRATIGVADLGENVLIEVVVSAAKTA
>Mature_116_residues
MIKRHMQTRINHRVVEHNRVLYFGGLIADDLSVDMKGQTQQICRKIDELLQKVGSSKAHLLTAMIYISDFSQKEGMNEAW
LEWLPGELLPTRATIGVADLGENVLIEVVVSAAKTA

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=100, Percent_Identity=33, Blast_Score=63, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13002; Mature: 13002

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRHMQTRINHRVVEHNRVLYFGGLIADDLSVDMKGQTQQICRKIDELLQKVGSSKAHL
CCCHHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
LTAMIYISDFSQKEGMNEAWLEWLPGELLPTRATIGVADLGENVLIEVVVSAAKTA
HHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHCCHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MIKRHMQTRINHRVVEHNRVLYFGGLIADDLSVDMKGQTQQICRKIDELLQKVGSSKAHL
CCCHHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
LTAMIYISDFSQKEGMNEAWLEWLPGELLPTRATIGVADLGENVLIEVVVSAAKTA
HHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHCCHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA