Click here to switch to the map view.

The map label for this gene is cc4 [H]

Identifier: 110633941

GI number: 110633941

Start: 1711499

End: 1712074

Strand: Direct

Name: cc4 [H]

Synonym: Meso_1589

Alternate gene names: 110633941

Gene position: 1711499-1712074 (Clockwise)

Preceding gene: 110633940

Following gene: 110633942

Centisome position: 38.79

GC content: 59.38

Gene sequence:

>576_bases
ATGAGACGATTGGCTCTTCTGTTTCTCGGCGGGCTGATGCTCGCCGAGAGCGCTCAGGCCCAGGTGCAAGGCGATAGGGC
TGCTGGCCGGCAAGCCGCCGGCCAATGCCGCACCTGCCACGGTCTCGACGGCTATGCGCAAATTCCGATCGCACCGCACA
TAGGCGGTGAGCCCGAAAGCTATATCCGCGCGCAGCTGACCGCATTCCGAGATGGGACGCGCGAGCACGAAATGATGACG
ATTGTTGCGCGCACGTTAAGCGACCAGCAGATCGCCGACCTCGCTGCATGGTACTCCGGCCACGAAGTCACGGCGGAGCT
CACGGCTGATCCCGCGGAAGCGCCTGAGGCTTGCGTAGGCTGCCACGGCGCGGACGGGATCCATCTAATCGAAGATGCGC
CCAATCTTGCTGGTGAGACGAATATATACATCGATACTCAGTTGAAGGCTTTTCGCAACGGCAATCGGGTGCATGACGTG
ATGACCCCAATTGCATCAGAACTGACCGATGAAGAAATTCGAGCCGTCGCCGACTGGTACGCAAAAGTGAAGCTCGACAT
CAGGATGGTCGAATAG

Upstream 100 bases:

>100_bases
GCCGTCCGATGGACATCGCCTTCCTGCCTGATGGCTCGATGCTCGTCTCCGACGACTTCGCCGGCGCGATCTGGCGGATC
GCCTATAATCCGGCGCGCCA

Downstream 100 bases:

>100_bases
ACATTCGTCAATAGATTTTCCGGCTTCCGCCTATCAGTTTGGAGGACTGACGGAGCGGGGAATAGCGGCCGAAGCACTCT
GCTACCAGCGCCCATGTGAG

Product: class I diheme cytochrome c4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MRRLALLFLGGLMLAESAQAQVQGDRAAGRQAAGQCRTCHGLDGYAQIPIAPHIGGEPESYIRAQLTAFRDGTREHEMMT
IVARTLSDQQIADLAAWYSGHEVTAELTADPAEAPEACVGCHGADGIHLIEDAPNLAGETNIYIDTQLKAFRNGNRVHDV
MTPIASELTDEEIRAVADWYAKVKLDIRMVE

Sequences:

>Translated_191_residues
MRRLALLFLGGLMLAESAQAQVQGDRAAGRQAAGQCRTCHGLDGYAQIPIAPHIGGEPESYIRAQLTAFRDGTREHEMMT
IVARTLSDQQIADLAAWYSGHEVTAELTADPAEAPEACVGCHGADGIHLIEDAPNLAGETNIYIDTQLKAFRNGNRVHDV
MTPIASELTDEEIRAVADWYAKVKLDIRMVE
>Mature_191_residues
MRRLALLFLGGLMLAESAQAQVQGDRAAGRQAAGQCRTCHGLDGYAQIPIAPHIGGEPESYIRAQLTAFRDGTREHEMMT
IVARTLSDQQIADLAAWYSGHEVTAELTADPAEAPEACVGCHGADGIHLIEDAPNLAGETNIYIDTQLKAFRNGNRVHDV
MTPIASELTDEEIRAVADWYAKVKLDIRMVE

Specific function: Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 20769; Mature: 20769

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLALLFLGGLMLAESAQAQVQGDRAAGRQAAGQCRTCHGLDGYAQIPIAPHIGGEPES
CCHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHCCCCCCCCCCCCCEECCCCCCCCCCHHH
YIRAQLTAFRDGTREHEMMTIVARTLSDQQIADLAAWYSGHEVTAELTADPAEAPEACVG
HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHC
CHGADGIHLIEDAPNLAGETNIYIDTQLKAFRNGNRVHDVMTPIASELTDEEIRAVADWY
CCCCCCEEEECCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHH
AKVKLDIRMVE
HEEEEEEEEEC
>Mature Secondary Structure
MRRLALLFLGGLMLAESAQAQVQGDRAAGRQAAGQCRTCHGLDGYAQIPIAPHIGGEPES
CCHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHCCCCCCCCCCCCCEECCCCCCCCCCHHH
YIRAQLTAFRDGTREHEMMTIVARTLSDQQIADLAAWYSGHEVTAELTADPAEAPEACVG
HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHC
CHGADGIHLIEDAPNLAGETNIYIDTQLKAFRNGNRVHDVMTPIASELTDEEIRAVADWY
CCCCCCEEEECCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHH
AKVKLDIRMVE
HEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]