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The map label for this gene is ycbB [H]

Identifier: 110633909

GI number: 110633909

Start: 1673591

End: 1675576

Strand: Reverse

Name: ycbB [H]

Synonym: Meso_1556

Alternate gene names: 110633909

Gene position: 1675576-1673591 (Counterclockwise)

Preceding gene: 110633910

Following gene: 110633906

Centisome position: 37.97

GC content: 58.71

Gene sequence:

>1986_bases
GTGAGGAAATGGATTCTGCAATCAGGAAGCTTGTCCGCGCTTGTTTTTGCAGCGACGCTGTTCAGCTCGACGCATCAGGC
CGCCGCAGAGCGCTACCTGTTTGATATGCTCTTCAACAACAACCGATCTCAGGATCGGGCGGTGCAGCCTTCGCCCAATG
GTGCAGCGGGACAGAATTCAGCGCCGAGGGCCGGCAGACACGAAAGGCCAGTCGTCCGCAGGCCCCTTCCGCAGGTCTCG
GCCCCCAGCTTCTACAGCTTCAAACCGGATCCTCTTGTAAAGGTCGACTTCGCCGCGATTTCATCAGTGCTTCGCAATCC
CGCGGGGGAAGCGGTCGATACGCGCTTCACGGAAGCGCTGGACGGCCTTTCAGATTTCGATCTGCGCGCGGAAGAACGCA
TCGCTGCGGCTCTGGTTCAGTACTACGCCCAATCCCCTCGCTTCATCTGGGTCGATGAGAATGGCCCGAACAAGCGGGCG
GACGAAATCCTCGATGTTCTGGCGGATGCGGATGCATTCGGGCTTTCGCACATAGACTATGCCATTCGTGCACCCATTGC
CGTGCAGCCGCAGGCTCCATCCTCATCGGCGCGCATGAAGGCACTTATCCGGTTTGAGATGACGCTTTCCGCGCGCGCCC
TGCGCTATGCTCGCGATGCAAGACTCGGCCGCCTCGATCCAAACAAGCTGTCGGGCTATCACGACTTCAAGCGTAAGCCG
TTGGACGAGAAACTTGTGCTGGAAATCCTGGCGTCCAGCGCGGAACCTGCCACTTACCTGCAGTCGCTTCATCCCCAAAA
CGAACTCTTCAACGCTTTGCGGGACGAATTGAAGAAGCTTCGCACCGAAGCGGAACAGGAAAAGGAAGAGATTGTCATTG
CACCGGACATTCTTGTCCGTCCCGGCGCGAGCCATCCTGATTTTTCCAAGGTCCTGCTCGCGATAGAAAGCAAAGCCGAC
GACGATTTCAGGGCCGAGCATGGCGCCGTGCTGACCGCCCATTTGGGAAGCCAGACCTATGCGGAAGAGCTGATCCCCAT
CATCAAAGCGGTGCAGAGACAGCACAAGCTCAGCCCGGATGGCATCGTGGGACAGCGCACGGTGAGAGCGCTAACTGGCG
AGTCCGCGTCCAGCCGCATCGAGAAGGTGCTCCTGTCCATGGAGCGGCTGCGCTGGCAACCGTCCTATCTGGGCAGCGCG
CGCGTGATGATCAATGTTCCATCTTTCACCGCCAGCTATTTCGAGAATGGAACAGAAAAGCTCTCAATGCGGGCGGTGGT
CGGCCAGTCCTCCAGCCAAACCTATTTTTTTCATGATGAGATCGAGTATGTCGAATTCAACCCTTATTGGGGCGTGCCGC
GATCGATCATTGTCAACGAAATGCTGCCGAAGCTTCGCCGCGATCCCGGCTACTTGGATCGTGCGGGCTATGAGGTGTTC
GATTCACGCGGCAGGCGTGTAGCGTCCTCCGCAATCAACTGGGCTGTCTATGGGGCCAATGTCCCCTATGGTGTGCGCCA
ACCGCCGGGTGCGAGCAATGCCCTTGGCCGGCTCAAGATCATGTTCCCCAACTCGCATGACATCTACATGCACGACACGC
CGCAAAAATCGCTGTTCGCGCGCGACAGCAGAGCATTCAGCCATGGCTGCGTGCGCCTGGAGGATCCGGGTGCCATGGCG
GCCGCCGTGCTCGGGATTTCCAGCGAGGAGGTTGCTGCCGAGATCAATAAGGGCCGGAACATGCGCCGGAACGTGCCAAG
CAAGATACCGGTCTATGTCGGCTACTTCACCGCCTGGCCCGAAACCTCAGGATCGATTTCCTACCATGCGGACATTTATG
AGCGCGACGCGCATCTGAAAAAGGCTCTGTCCCGGATTGAAGAGGTTCGCACGGAGGGGGCAGATCCAGTCCTGGCCGCG
CAGAACGGCGATCTCCAGCAATCTCATAGCCTAGATATCCAGGCGGCCGAGCAGCACGTACGCTAA

Upstream 100 bases:

>100_bases
AGAATCGATGTAGTTTTGGTGGCTGAAGCCACAACGTCGGTCGTGCCGGCAGCCGGCAAAGGGGTCATCCCAGTTCTGTT
ACTCGGCGGGAGAAGAACAA

Downstream 100 bases:

>100_bases
AATATGGCGACAGCAAGAATTCGTGGGAGCGCTGCGATAGAGGCGGCAGCCTCTCACTGGTCAAGTATTTGGTTCAAGCG
CCCGCGCTTGGCCGGGAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 661; Mature: 661

Protein sequence:

>661_residues
MRKWILQSGSLSALVFAATLFSSTHQAAAERYLFDMLFNNNRSQDRAVQPSPNGAAGQNSAPRAGRHERPVVRRPLPQVS
APSFYSFKPDPLVKVDFAAISSVLRNPAGEAVDTRFTEALDGLSDFDLRAEERIAAALVQYYAQSPRFIWVDENGPNKRA
DEILDVLADADAFGLSHIDYAIRAPIAVQPQAPSSSARMKALIRFEMTLSARALRYARDARLGRLDPNKLSGYHDFKRKP
LDEKLVLEILASSAEPATYLQSLHPQNELFNALRDELKKLRTEAEQEKEEIVIAPDILVRPGASHPDFSKVLLAIESKAD
DDFRAEHGAVLTAHLGSQTYAEELIPIIKAVQRQHKLSPDGIVGQRTVRALTGESASSRIEKVLLSMERLRWQPSYLGSA
RVMINVPSFTASYFENGTEKLSMRAVVGQSSSQTYFFHDEIEYVEFNPYWGVPRSIIVNEMLPKLRRDPGYLDRAGYEVF
DSRGRRVASSAINWAVYGANVPYGVRQPPGASNALGRLKIMFPNSHDIYMHDTPQKSLFARDSRAFSHGCVRLEDPGAMA
AAVLGISSEEVAAEINKGRNMRRNVPSKIPVYVGYFTAWPETSGSISYHADIYERDAHLKKALSRIEEVRTEGADPVLAA
QNGDLQQSHSLDIQAAEQHVR

Sequences:

>Translated_661_residues
MRKWILQSGSLSALVFAATLFSSTHQAAAERYLFDMLFNNNRSQDRAVQPSPNGAAGQNSAPRAGRHERPVVRRPLPQVS
APSFYSFKPDPLVKVDFAAISSVLRNPAGEAVDTRFTEALDGLSDFDLRAEERIAAALVQYYAQSPRFIWVDENGPNKRA
DEILDVLADADAFGLSHIDYAIRAPIAVQPQAPSSSARMKALIRFEMTLSARALRYARDARLGRLDPNKLSGYHDFKRKP
LDEKLVLEILASSAEPATYLQSLHPQNELFNALRDELKKLRTEAEQEKEEIVIAPDILVRPGASHPDFSKVLLAIESKAD
DDFRAEHGAVLTAHLGSQTYAEELIPIIKAVQRQHKLSPDGIVGQRTVRALTGESASSRIEKVLLSMERLRWQPSYLGSA
RVMINVPSFTASYFENGTEKLSMRAVVGQSSSQTYFFHDEIEYVEFNPYWGVPRSIIVNEMLPKLRRDPGYLDRAGYEVF
DSRGRRVASSAINWAVYGANVPYGVRQPPGASNALGRLKIMFPNSHDIYMHDTPQKSLFARDSRAFSHGCVRLEDPGAMA
AAVLGISSEEVAAEINKGRNMRRNVPSKIPVYVGYFTAWPETSGSISYHADIYERDAHLKKALSRIEEVRTEGADPVLAA
QNGDLQQSHSLDIQAAEQHVR
>Mature_661_residues
MRKWILQSGSLSALVFAATLFSSTHQAAAERYLFDMLFNNNRSQDRAVQPSPNGAAGQNSAPRAGRHERPVVRRPLPQVS
APSFYSFKPDPLVKVDFAAISSVLRNPAGEAVDTRFTEALDGLSDFDLRAEERIAAALVQYYAQSPRFIWVDENGPNKRA
DEILDVLADADAFGLSHIDYAIRAPIAVQPQAPSSSARMKALIRFEMTLSARALRYARDARLGRLDPNKLSGYHDFKRKP
LDEKLVLEILASSAEPATYLQSLHPQNELFNALRDELKKLRTEAEQEKEEIVIAPDILVRPGASHPDFSKVLLAIESKAD
DDFRAEHGAVLTAHLGSQTYAEELIPIIKAVQRQHKLSPDGIVGQRTVRALTGESASSRIEKVLLSMERLRWQPSYLGSA
RVMINVPSFTASYFENGTEKLSMRAVVGQSSSQTYFFHDEIEYVEFNPYWGVPRSIIVNEMLPKLRRDPGYLDRAGYEVF
DSRGRRVASSAINWAVYGANVPYGVRQPPGASNALGRLKIMFPNSHDIYMHDTPQKSLFARDSRAFSHGCVRLEDPGAMA
AAVLGISSEEVAAEINKGRNMRRNVPSKIPVYVGYFTAWPETSGSISYHADIYERDAHLKKALSRIEEVRTEGADPVLAA
QNGDLQQSHSLDIQAAEQHVR

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=283, Percent_Identity=34.2756183745583, Blast_Score=176, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 73543; Mature: 73543

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKWILQSGSLSALVFAATLFSSTHQAAAERYLFDMLFNNNRSQDRAVQPSPNGAAGQNS
CCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
APRAGRHERPVVRRPLPQVSAPSFYSFKPDPLVKVDFAAISSVLRNPAGEAVDTRFTEAL
CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHCCCCCCHHHHHHHHHH
DGLSDFDLRAEERIAAALVQYYAQSPRFIWVDENGPNKRADEILDVLADADAFGLSHIDY
CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHCHHHHHH
AIRAPIAVQPQAPSSSARMKALIRFEMTLSARALRYARDARLGRLDPNKLSGYHDFKRKP
HHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHCCC
LDEKLVLEILASSAEPATYLQSLHPQNELFNALRDELKKLRTEAEQEKEEIVIAPDILVR
CCHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEC
PGASHPDFSKVLLAIESKADDDFRAEHGAVLTAHLGSQTYAEELIPIIKAVQRQHKLSPD
CCCCCCCHHHHHHHHHCCCCCCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC
GIVGQRTVRALTGESASSRIEKVLLSMERLRWQPSYLGSARVMINVPSFTASYFENGTEK
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHCCHHH
LSMRAVVGQSSSQTYFFHDEIEYVEFNPYWGVPRSIIVNEMLPKLRRDPGYLDRAGYEVF
EEEHHEECCCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
DSRGRRVASSAINWAVYGANVPYGVRQPPGASNALGRLKIMFPNSHDIYMHDTPQKSLFA
HHCCCCHHHHHCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCHHHHH
RDSRAFSHGCVRLEDPGAMAAAVLGISSEEVAAEINKGRNMRRNVPSKIPVYVGYFTAWP
HHHHHHHCCEEEECCCCHHHHHHHCCCHHHHHHHHHCCCCHHHCCCCCCCEEEEEEEECC
ETSGSISYHADIYERDAHLKKALSRIEEVRTEGADPVLAAQNGDLQQSHSLDIQAAEQHV
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHCC
R
C
>Mature Secondary Structure
MRKWILQSGSLSALVFAATLFSSTHQAAAERYLFDMLFNNNRSQDRAVQPSPNGAAGQNS
CCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
APRAGRHERPVVRRPLPQVSAPSFYSFKPDPLVKVDFAAISSVLRNPAGEAVDTRFTEAL
CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHCCCCCCHHHHHHHHHH
DGLSDFDLRAEERIAAALVQYYAQSPRFIWVDENGPNKRADEILDVLADADAFGLSHIDY
CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHCHHHHHH
AIRAPIAVQPQAPSSSARMKALIRFEMTLSARALRYARDARLGRLDPNKLSGYHDFKRKP
HHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHCCC
LDEKLVLEILASSAEPATYLQSLHPQNELFNALRDELKKLRTEAEQEKEEIVIAPDILVR
CCHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEC
PGASHPDFSKVLLAIESKADDDFRAEHGAVLTAHLGSQTYAEELIPIIKAVQRQHKLSPD
CCCCCCCHHHHHHHHHCCCCCCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC
GIVGQRTVRALTGESASSRIEKVLLSMERLRWQPSYLGSARVMINVPSFTASYFENGTEK
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHCCHHH
LSMRAVVGQSSSQTYFFHDEIEYVEFNPYWGVPRSIIVNEMLPKLRRDPGYLDRAGYEVF
EEEHHEECCCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
DSRGRRVASSAINWAVYGANVPYGVRQPPGASNALGRLKIMFPNSHDIYMHDTPQKSLFA
HHCCCCHHHHHCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCHHHHH
RDSRAFSHGCVRLEDPGAMAAAVLGISSEEVAAEINKGRNMRRNVPSKIPVYVGYFTAWP
HHHHHHHCCEEEECCCCHHHHHHHCCCHHHHHHHHHCCCCHHHCCCCCCCEEEEEEEECC
ETSGSISYHADIYERDAHLKKALSRIEEVRTEGADPVLAAQNGDLQQSHSLDIQAAEQHV
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]