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The map label for this gene is 110633903

Identifier: 110633903

GI number: 110633903

Start: 1668666

End: 1669364

Strand: Reverse

Name: 110633903

Synonym: Meso_1550

Alternate gene names: NA

Gene position: 1669364-1668666 (Counterclockwise)

Preceding gene: 110633904

Following gene: 110633901

Centisome position: 37.83

GC content: 60.94

Gene sequence:

>699_bases
ATGCGGCTGTTCTGGATCGTCATCGCCGTCATGCTTGCAGGCGTGGGCCTGCTGGTCGCCTCTCACGACAGCGGCACCGT
CTTTGGCATCGCCAGCGATTCTTTCGCTTCGATGCTTTACCTTGGCCTGTGGGCGGCGGTGCTCATTGTCGGCGTTTTTG
CTGCCCGCACACGGTTCCATCATGCCGCGCGTGACCTCGCTTACTGGCTGCTTATCCTTCTGGTGCTGATGACCGGATAT
CAATACCGCTATGAATTGCAGGATGTGGCGAGCCGGCTTACGGCCGGATTGATCCCCGGCAGCCCGATAAGCCTTTCGGA
TTCTTCACGCGCCGCCGTTATGATCGACAAGGCGGTCAATGGCCATTTCGAAGTGAGGATTCTTGCCAACGATGCCGCGG
TCCGCGCCCTGATCGATACCGGCGCCACCACCACGGTGCTCACGGCGCAGGATGCCGCGCGAGCGGGAATCGATGTCGTC
GCACTTTCTTATTCCTGGCCGGTGATGACCGCGAATGGGCGGGCAATGGCAGCCCGCGCCCGCTTGGACACGCTGCGGAT
TGGCCCCATCGAGCGTCACGACGTGACAGTTCTTGTGGCGGAGCCTGGCTTGCTTGAGCAAAGCCTGCTTGGGATGCAGT
TCCTGAGCAGCCTCTCGAGCTTCGAAATGCGGGGTGACCGCCTCATCTTGACTGACTAG

Upstream 100 bases:

>100_bases
GGACGGACTGCCGGCAAGGCTTGCAGATCTTGAGCGCACCACTCTCGCAGAGCCGTTCCGGGCGATGCCATCCGGCAGGC
GCGTGGAGAGGGCATGAGCC

Downstream 100 bases:

>100_bases
GCGCTGCCCACGGACAGCGCCTTACGCCGCTTCATGGCGTGCGGCCGGATCGATTTCCGCCAGCGCGCGAAGCAGCACGT
CCGGGCCTGCCCTGGGCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MRLFWIVIAVMLAGVGLLVASHDSGTVFGIASDSFASMLYLGLWAAVLIVGVFAARTRFHHAARDLAYWLLILLVLMTGY
QYRYELQDVASRLTAGLIPGSPISLSDSSRAAVMIDKAVNGHFEVRILANDAAVRALIDTGATTTVLTAQDAARAGIDVV
ALSYSWPVMTANGRAMAARARLDTLRIGPIERHDVTVLVAEPGLLEQSLLGMQFLSSLSSFEMRGDRLILTD

Sequences:

>Translated_232_residues
MRLFWIVIAVMLAGVGLLVASHDSGTVFGIASDSFASMLYLGLWAAVLIVGVFAARTRFHHAARDLAYWLLILLVLMTGY
QYRYELQDVASRLTAGLIPGSPISLSDSSRAAVMIDKAVNGHFEVRILANDAAVRALIDTGATTTVLTAQDAARAGIDVV
ALSYSWPVMTANGRAMAARARLDTLRIGPIERHDVTVLVAEPGLLEQSLLGMQFLSSLSSFEMRGDRLILTD
>Mature_232_residues
MRLFWIVIAVMLAGVGLLVASHDSGTVFGIASDSFASMLYLGLWAAVLIVGVFAARTRFHHAARDLAYWLLILLVLMTGY
QYRYELQDVASRLTAGLIPGSPISLSDSSRAAVMIDKAVNGHFEVRILANDAAVRALIDTGATTTVLTAQDAARAGIDVV
ALSYSWPVMTANGRAMAARARLDTLRIGPIERHDVTVLVAEPGLLEQSLLGMQFLSSLSSFEMRGDRLILTD

Specific function: Unknown

COG id: COG3577

COG function: function code R; Predicted aspartyl protease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011969
- InterPro:   IPR021109
- InterPro:   IPR001969 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25022; Mature: 25022

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00141 ASP_PROTEASE ; PS50175 ASP_PROT_RETROV

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFWIVIAVMLAGVGLLVASHDSGTVFGIASDSFASMLYLGLWAAVLIVGVFAARTRFH
CCHHHHHHHHHHHCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HAARDLAYWLLILLVLMTGYQYRYELQDVASRLTAGLIPGSPISLSDSSRAAVMIDKAVN
HHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC
GHFEVRILANDAAVRALIDTGATTTVLTAQDAARAGIDVVALSYSWPVMTANGRAMAARA
CEEEEEEEECCHHHHHHHHCCCCEEEEECCHHHHCCCEEEEEEECCCEEEECCCEEEHHH
RLDTLRIGPIERHDVTVLVAEPGLLEQSLLGMQFLSSLSSFEMRGDRLILTD
HHCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC
>Mature Secondary Structure
MRLFWIVIAVMLAGVGLLVASHDSGTVFGIASDSFASMLYLGLWAAVLIVGVFAARTRFH
CCHHHHHHHHHHHCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HAARDLAYWLLILLVLMTGYQYRYELQDVASRLTAGLIPGSPISLSDSSRAAVMIDKAVN
HHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC
GHFEVRILANDAAVRALIDTGATTTVLTAQDAARAGIDVVALSYSWPVMTANGRAMAARA
CEEEEEEEECCHHHHHHHHCCCCEEEEECCHHHHCCCEEEEEEECCCEEEECCCEEEHHH
RLDTLRIGPIERHDVTVLVAEPGLLEQSLLGMQFLSSLSSFEMRGDRLILTD
HHCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1917841 [H]