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The map label for this gene is ytfM [H]

Identifier: 110633874

GI number: 110633874

Start: 1636080

End: 1638011

Strand: Reverse

Name: ytfM [H]

Synonym: Meso_1521

Alternate gene names: 110633874

Gene position: 1638011-1636080 (Counterclockwise)

Preceding gene: 110633875

Following gene: 110633873

Centisome position: 37.12

GC content: 63.2

Gene sequence:

>1932_bases
TTGAGCAACCGCACTGCCAAGCCTTACCGGATCTCCGTTCTCGTGCGGGCGACTGTCCTTGTAGGCGCCGCGGCGATAGC
CGTCCCGCCTCCGTCCGCCGCACTGGAGATTTTCGGCTTGCGCCTCTTCGAGCGCAACACGCCGGAAGAGGAAGTCATAG
GCACGCCCCAGCCCTATATGGTGGATTTCGTCGTCCAGGGTGGCGACAGGGATATCGAACGGGTGCTGCAACGCGCCTCC
CGGCTTTGGGGCGACCGGGAAGAACCGGCCTCGGGCGCAGCAGGGCTTATCGCCAAGGCACGCGGAGATTACCGACGCCT
TCTCAACGCGCTTTATTCCGTGGCGCGATATGGCGGGACGATTTCAATTACCATCGACGGGCGCGAGGCAGATGATCTTC
TCCCCGATGCGCAACTGGCTAGCCCAGCTTCCGTGCGTGTCGTGGTTGATCCAGGTCCCTTGTTCCACTTCGCGGATGCC
CGGATAATAAACCAGGCACCTCCCGCCACCAACCGTCGCGACAGGGTTGAAAACCCGGCGGATCAGGGCTTTCGCGTCGG
CGAACCAGCGCGCAGCGGAGTGATCATTGAGGCCGGCGAGCTTGCAGCCGATGCCTGGCGGCATCATGGCTATGCCAAGG
CAAACGTGATCGAGCGGCGGATCGTCGCCGCCCATACGAACGACACGATCGATGCAGAGCTGACGGTGGATCCCGGACGG
CATGCGGTTTTCGGGCCTGTCACCGTAAGCGGCACGGAGCGCATGGACCCCGACTTTGTCGCGCGCCAGACCGGCATCAT
ACCTGGTGCGGAATACGATCCCGACGAGATGAAGGAGGCGCGCGACAACATCTCCAGGCTCGATGTCTTCCGTTCGGCGC
GTATTCAGGAGGCGGAAACCATCGGCGCGGACGGAAGCCTGCCCATACAGGTGATCGTCCAGGAACGCCTGCCGCGGCGC
TTTGGCGTCGGCGGCTCCTATTCCACCGTGGACGGATTGGGGCTGGAGGCCTTCTGGCTGCACCGAAATCTTTTCGGCCG
CGCGGAACGACTGCGCATCGAAGGAAAAGTCGCCGGCATAGGTCCGACCATCGATCCCGCGGAATTGACCTATCGTGTGG
GAACGACCTTCACGAAACCCGGCATCTACTATTCGCCCAATACGGATTTCGTCGCCTCGATCTATGGCGATCGCGAGGTG
CTGGACATCTACACGCGCACCGGGGTGACCGCCGAAGCGGGACTCACCCACCGCTTCACGGACCAGATCACTGGCAGGCT
GCTCGCCAATGCCGCATATGCGACCTTCGATGACGATTTCGGCGAGCGCGAGTTCGTCACCGCCGGGTTTCTGGGCGGGA
TCGTCTACGATTCGCGGGACAATCCCGCCGACGCGACAGAGGGCATCTTCGCCGAACTGACGGTGGAGCCCTTCTACGAG
TTCAACTACGGCAACGCCGCCGCGCGCCTCACAGCCGAGGGGCGGACCTATTACAGCTTCGATGAGGACAGCCGGTTCGT
TGCCGCCGGACGTCTGAAAATAGGAGCGCTCCTCGATCCCCCTCTTGCGGAGACGCCGCCCGACAAACTGTTCCTTGCAG
GCGGAGGCGGTTCTGTGCGCGGCTATGCCTATCGCAGCATCGGCGTTGAAACCGCCGAGGGCACCACGGGTGGCCGCTCG
CTGATCGAAGCCTCCGCGGAGCTGCGCGTCCGGGTCACGCAGTCCATCGGCCTAGTCGGGTTCGTCGACGCGGGTTACGT
GGATGACAAGGCATTTCCTGATTTTTCGCAGGATCTGCGGGTCGGCGTCGGCGCTGGACTGCGCTATCTAACCGGCTTCG
GACCCATCCGGCTCGACTTGGCCGTACCGCTCGACCCGCGCGGGGACGATCCGGATGTGGCCTTTTATGTCGGCATAGGA
CAGGCATTCTGA

Upstream 100 bases:

>100_bases
CTGCCGTCAGCTCGTTGCTGTGGCAGCACATGGTGGTGGGGCAAGCGGGGACATTGAGAGCTAGCTGGCAAGCGCAGTTT
TTTGCCGGCCGGGAGGGATA

Downstream 100 bases:

>100_bases
TGCGCTTTCTCATTGCCCTTCTCATGGCTCTCGCGATCTTGCCGGCGCTTGCGCAGGACGCGGTTCAGGATACGCCCGAG
GAGGAGCGCTCGCTTTTCCT

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 643; Mature: 642

Protein sequence:

>643_residues
MSNRTAKPYRISVLVRATVLVGAAAIAVPPPSAALEIFGLRLFERNTPEEEVIGTPQPYMVDFVVQGGDRDIERVLQRAS
RLWGDREEPASGAAGLIAKARGDYRRLLNALYSVARYGGTISITIDGREADDLLPDAQLASPASVRVVVDPGPLFHFADA
RIINQAPPATNRRDRVENPADQGFRVGEPARSGVIIEAGELAADAWRHHGYAKANVIERRIVAAHTNDTIDAELTVDPGR
HAVFGPVTVSGTERMDPDFVARQTGIIPGAEYDPDEMKEARDNISRLDVFRSARIQEAETIGADGSLPIQVIVQERLPRR
FGVGGSYSTVDGLGLEAFWLHRNLFGRAERLRIEGKVAGIGPTIDPAELTYRVGTTFTKPGIYYSPNTDFVASIYGDREV
LDIYTRTGVTAEAGLTHRFTDQITGRLLANAAYATFDDDFGEREFVTAGFLGGIVYDSRDNPADATEGIFAELTVEPFYE
FNYGNAAARLTAEGRTYYSFDEDSRFVAAGRLKIGALLDPPLAETPPDKLFLAGGGGSVRGYAYRSIGVETAEGTTGGRS
LIEASAELRVRVTQSIGLVGFVDAGYVDDKAFPDFSQDLRVGVGAGLRYLTGFGPIRLDLAVPLDPRGDDPDVAFYVGIG
QAF

Sequences:

>Translated_643_residues
MSNRTAKPYRISVLVRATVLVGAAAIAVPPPSAALEIFGLRLFERNTPEEEVIGTPQPYMVDFVVQGGDRDIERVLQRAS
RLWGDREEPASGAAGLIAKARGDYRRLLNALYSVARYGGTISITIDGREADDLLPDAQLASPASVRVVVDPGPLFHFADA
RIINQAPPATNRRDRVENPADQGFRVGEPARSGVIIEAGELAADAWRHHGYAKANVIERRIVAAHTNDTIDAELTVDPGR
HAVFGPVTVSGTERMDPDFVARQTGIIPGAEYDPDEMKEARDNISRLDVFRSARIQEAETIGADGSLPIQVIVQERLPRR
FGVGGSYSTVDGLGLEAFWLHRNLFGRAERLRIEGKVAGIGPTIDPAELTYRVGTTFTKPGIYYSPNTDFVASIYGDREV
LDIYTRTGVTAEAGLTHRFTDQITGRLLANAAYATFDDDFGEREFVTAGFLGGIVYDSRDNPADATEGIFAELTVEPFYE
FNYGNAAARLTAEGRTYYSFDEDSRFVAAGRLKIGALLDPPLAETPPDKLFLAGGGGSVRGYAYRSIGVETAEGTTGGRS
LIEASAELRVRVTQSIGLVGFVDAGYVDDKAFPDFSQDLRVGVGAGLRYLTGFGPIRLDLAVPLDPRGDDPDVAFYVGIG
QAF
>Mature_642_residues
SNRTAKPYRISVLVRATVLVGAAAIAVPPPSAALEIFGLRLFERNTPEEEVIGTPQPYMVDFVVQGGDRDIERVLQRASR
LWGDREEPASGAAGLIAKARGDYRRLLNALYSVARYGGTISITIDGREADDLLPDAQLASPASVRVVVDPGPLFHFADAR
IINQAPPATNRRDRVENPADQGFRVGEPARSGVIIEAGELAADAWRHHGYAKANVIERRIVAAHTNDTIDAELTVDPGRH
AVFGPVTVSGTERMDPDFVARQTGIIPGAEYDPDEMKEARDNISRLDVFRSARIQEAETIGADGSLPIQVIVQERLPRRF
GVGGSYSTVDGLGLEAFWLHRNLFGRAERLRIEGKVAGIGPTIDPAELTYRVGTTFTKPGIYYSPNTDFVASIYGDREVL
DIYTRTGVTAEAGLTHRFTDQITGRLLANAAYATFDDDFGEREFVTAGFLGGIVYDSRDNPADATEGIFAELTVEPFYEF
NYGNAAARLTAEGRTYYSFDEDSRFVAAGRLKIGALLDPPLAETPPDKLFLAGGGGSVRGYAYRSIGVETAEGTTGGRSL
IEASAELRVRVTQSIGLVGFVDAGYVDDKAFPDFSQDLRVGVGAGLRYLTGFGPIRLDLAVPLDPRGDDPDVAFYVGIGQ
AF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=430, Percent_Identity=25.5813953488372, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 69574; Mature: 69442

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNRTAKPYRISVLVRATVLVGAAAIAVPPPSAALEIFGLRLFERNTPEEEVIGTPQPYM
CCCCCCCCEEEEEEEEEHHHHHHEEEECCCCHHHHHHHEEHEECCCCCHHHHCCCCCCEE
VDFVVQGGDRDIERVLQRASRLWGDREEPASGAAGLIAKARGDYRRLLNALYSVARYGGT
EEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCE
ISITIDGREADDLLPDAQLASPASVRVVVDPGPLFHFADARIINQAPPATNRRDRVENPA
EEEEECCCCHHHCCCCCCCCCCCEEEEEECCCCCEEECCCEEECCCCCCCCCHHHCCCCH
DQGFRVGEPARSGVIIEAGELAADAWRHHGYAKANVIERRIVAAHTNDTIDAELTVDPGR
HCCCCCCCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHEEEEEECCCCEEEEEEECCCC
HAVFGPVTVSGTERMDPDFVARQTGIIPGAEYDPDEMKEARDNISRLDVFRSARIQEAET
CEEEECEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGADGSLPIQVIVQERLPRRFGVGGSYSTVDGLGLEAFWLHRNLFGRAERLRIEGKVAGI
CCCCCCCCCEEEEHHHCCHHHCCCCCCCCCCCCCCEEEEEHHHHHCCCEEEEEEEEEECC
GPTIDPAELTYRVGTTFTKPGIYYSPNTDFVASIYGDREVLDIYTRTGVTAEAGLTHRFT
CCCCCHHHEEEEECCEEECCCEEECCCCCEEEEECCCCEEEEEECCCCCEECCCCCHHHH
DQITGRLLANAAYATFDDDFGEREFVTAGFLGGIVYDSRDNPADATEGIFAELTVEPFYE
HHHHHHHHHHCEEEECCCCCCCCEEEEHHHHCCEEECCCCCCCCCCCCEEEEEEECCEEE
FNYGNAAARLTAEGRTYYSFDEDSRFVAAGRLKIGALLDPPLAETPPDKLFLAGGGGSVR
ECCCCEEEEEEECCCEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCEEEECCCCCCC
GYAYRSIGVETAEGTTGGRSLIEASAELRVRVTQSIGLVGFVDAGYVDDKAFPDFSQDLR
EEEEEECCCEECCCCCCCHHHHHCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHH
VGVGAGLRYLTGFGPIRLDLAVPLDPRGDDPDVAFYVGIGQAF
CCCCCCHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure 
SNRTAKPYRISVLVRATVLVGAAAIAVPPPSAALEIFGLRLFERNTPEEEVIGTPQPYM
CCCCCCCEEEEEEEEEHHHHHHEEEECCCCHHHHHHHEEHEECCCCCHHHHCCCCCCEE
VDFVVQGGDRDIERVLQRASRLWGDREEPASGAAGLIAKARGDYRRLLNALYSVARYGGT
EEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCE
ISITIDGREADDLLPDAQLASPASVRVVVDPGPLFHFADARIINQAPPATNRRDRVENPA
EEEEECCCCHHHCCCCCCCCCCCEEEEEECCCCCEEECCCEEECCCCCCCCCHHHCCCCH
DQGFRVGEPARSGVIIEAGELAADAWRHHGYAKANVIERRIVAAHTNDTIDAELTVDPGR
HCCCCCCCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHEEEEEECCCCEEEEEEECCCC
HAVFGPVTVSGTERMDPDFVARQTGIIPGAEYDPDEMKEARDNISRLDVFRSARIQEAET
CEEEECEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGADGSLPIQVIVQERLPRRFGVGGSYSTVDGLGLEAFWLHRNLFGRAERLRIEGKVAGI
CCCCCCCCCEEEEHHHCCHHHCCCCCCCCCCCCCCEEEEEHHHHHCCCEEEEEEEEEECC
GPTIDPAELTYRVGTTFTKPGIYYSPNTDFVASIYGDREVLDIYTRTGVTAEAGLTHRFT
CCCCCHHHEEEEECCEEECCCEEECCCCCEEEEECCCCEEEEEECCCCCEECCCCCHHHH
DQITGRLLANAAYATFDDDFGEREFVTAGFLGGIVYDSRDNPADATEGIFAELTVEPFYE
HHHHHHHHHHCEEEECCCCCCCCEEEEHHHHCCEEECCCCCCCCCCCCEEEEEEECCEEE
FNYGNAAARLTAEGRTYYSFDEDSRFVAAGRLKIGALLDPPLAETPPDKLFLAGGGGSVR
ECCCCEEEEEEECCCEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCEEEECCCCCCC
GYAYRSIGVETAEGTTGGRSLIEASAELRVRVTQSIGLVGFVDAGYVDDKAFPDFSQDLR
EEEEEECCCEECCCCCCCHHHHHCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHH
VGVGAGLRYLTGFGPIRLDLAVPLDPRGDDPDVAFYVGIGQAF
CCCCCCHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]