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The map label for this gene is ybiO [H]

Identifier: 110633810

GI number: 110633810

Start: 1552792

End: 1555098

Strand: Direct

Name: ybiO [H]

Synonym: Meso_1457

Alternate gene names: 110633810

Gene position: 1552792-1555098 (Clockwise)

Preceding gene: 110633806

Following gene: 110633812

Centisome position: 35.19

GC content: 60.03

Gene sequence:

>2307_bases
ATGCGGATTTTGGCTCTCCTCTTTTTATTGATTTGCGCATCACCGGTTGCTGCACAGTCAGCGAACGGCGCGAGTGGTGC
TGAAGCGGCTGAGTCTCCAGGCGATGTCGAAGCACTCATCCAAATTCTGGAAAACGATCAGGCGCGCACGCGCCTGATCC
AGACATTGCGCCAGGCCGAGACGGAGGAGGCCGCGGAGGAGGCAACGCCCACCGGGGTGCTCCAGATCGGCGAATATGCG
CGTGCTGCGGTGGAAAGCTCGGCAGCATTCATTTCTGCCGTGGTTCGCCTGTCAGGCGATATTTCCGATGTGCTCACCGG
CACGACGACTGTGGATTTCTCCATCATATGGAATGCCGTGCGCACGGTCATCGTCGTCGCCGTCGTTACTTTTTCGGCCT
TTTTCCTGCTGCGCCTTGGTTTTCTGCGCATCCAGCGCGCCCTTGCCGCGGCAGCAGCCGGTTCCGGTCCCCTGCGGCGC
TCGGGCCTGATCCTTGCGTCGGCTCTGTTCGACACGGCTACCGTGCTTCTGGCGTGGGCAGCCGGCTATGTGCCCGCTAT
CTACTTTGATTTGGCGGACCGGGCGGGAGGCGGCCAAACGCTTTTCCTGGGCGCCTTCCTTTCTGTTGAGCTGGCGAAAG
TCGTGGCTCGTGTGCTGCTTGCGCCCAGATGGCCCGCACTGCGCTTTCTGCGGATCGGCGATACCACTTCCGCCTATTGG
TATTTTTGGTCGAGCAGGCTCCTCAGCATTCTAGGCTACGCTTTCCTTTTTCTGGCCCCCCTTCTGGCCTCCGGCGTATC
CTATGGTGCAGCTCAGGTATTGCGCGCCTTTGTGCTTTTCTGTGCGCTCACCATGGCCTGCATCATCATTATGCAGAACC
GCGATCTCGTCCGCTCCTGGCTTATGCTTGGGGCGGAACGCGTCAAGTCCGAAGTGATTTCCCGCGCGCTTTCGATCCTC
GCCCGCTTCTGGAACGTGGTCGCGATCGCCTATCTCATACTGATTTTCGGCCTCTGGCTTGCCGACCATGAAGCCGCGCT
GCCTTTCGTGCTGACCGCCACTGCGCAGACATTCATCGCGATCGCCATCGGCACTGCGCTCACCATGGCGGTGACGCGGA
TAGCCGCAGGCGGCATGCATTTGCCCGACGATATTCGCACACGTGTGCCGCTGCTTGAACAGCGCCTCAACGCTTTCGTG
CCGAATGTCCTGCGGGTAACGCGTGGCGTTATTGTAATCGGCGTCATTATCGCCTCCGCCCAGATCTGGCTTGTAGCCGA
TTTCCTGGGTTGGATTTCGAGCGAGGTCGGCCAGCGTATCGTCACCTCCATCTTGTCGGCGGGGATCATCCTGATCGCCG
GCAGCCTGATCTATATTGTCGTCCAGTCCTGGGTGGAATACCGGCTCGACCCGCCGAAGGGGAGCAAGCCCAGTGCGCGG
GAGCGCACCTTGCTTTCGCTTTTCCGCAATGCCTTCACCGTCGCGCTCGGCGTCCTGACTTGCATGCTTGTCCTTTCCGA
ACTCGGGGTGAACATCGCTCCGCTTCTGGCAGGCGCCGGTATCCTCGGACTTGCCGTCGGCTTCGGCGCGCAAAAGCTGG
TGCAGGACATCATAACGGGCGCCTTCATCCAGTTCGAAAATGCCATGAACGAGGGAGACGTCGTCACAGCCGGCGGGGTG
ACGGGAACGGTCGAACGTCTCACGATCCGCTCGGTTTCGCTGCGCTCGCTTGATGGCGCCTACCATCTTATCCCGTTTTC
GTCGGTGGATTCCGTATCGAATTTCATGAAGAACTTCAGCTACCACGTTGCCAATATCGGTGTGGACTACGGGGTAAGCG
TTCCCGAAGTGAAGCGCGCCATGCAGGATGCCTTTGAACGCCTGAAGAAGACGGAGGAAGGCGAGCACATCATCGGCGAA
TTGGAGATGCACGGCGTGACCGAGTTCGGCGATTCGGCAATCATGGTGCGCGCACGCATCAAGACGCAGGCCGGACGACA
GTGGGCGATTGGCCGTCTCTACAATGAGATCATCAAGGAGTTGTTCGAGGAGCGGGGAATCGAAATCCCATTCCCGCATG
TCACGCTCAACGTCAGCAATGAAGATCTGGCACGGCTGACAAAGCCATTGATGGATTCCACAGATTCCAGTGAAGAAGCC
ATGAATTCGCCCGCCAAAGCGAAGCCGCGTGCGCCCCGGAACGATGGGGAGCGGCCCGCAGTCGCCGCCAAGCGCCTGCG
CTCAAGGCGGCCGTTGCAGGACGGTCCGCCTGACGATGAGCATGATCTGGCGGAGCAGCAGGCCTAG

Upstream 100 bases:

>100_bases
CCTCTCTATCGCCGCAAACTAATAATTGGTTAAGCAGCAGCTGCTTAGAAGAAGGTGGCGACGATTGGCGGCAGTCGCTG
GAGCTTCCTGCGGGGGTCTT

Downstream 100 bases:

>100_bases
AGTGTTGGAAAGTGGCTCAAGAAGATGGTGGGCGCGGTAGGGATTGAACCTACGACCCCACCCGTGTGAAGGGTGTGCTC
TCCCGCTGAGCTACGCGCCC

Product: MscS mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 768; Mature: 768

Protein sequence:

>768_residues
MRILALLFLLICASPVAAQSANGASGAEAAESPGDVEALIQILENDQARTRLIQTLRQAETEEAAEEATPTGVLQIGEYA
RAAVESSAAFISAVVRLSGDISDVLTGTTTVDFSIIWNAVRTVIVVAVVTFSAFFLLRLGFLRIQRALAAAAAGSGPLRR
SGLILASALFDTATVLLAWAAGYVPAIYFDLADRAGGGQTLFLGAFLSVELAKVVARVLLAPRWPALRFLRIGDTTSAYW
YFWSSRLLSILGYAFLFLAPLLASGVSYGAAQVLRAFVLFCALTMACIIIMQNRDLVRSWLMLGAERVKSEVISRALSIL
ARFWNVVAIAYLILIFGLWLADHEAALPFVLTATAQTFIAIAIGTALTMAVTRIAAGGMHLPDDIRTRVPLLEQRLNAFV
PNVLRVTRGVIVIGVIIASAQIWLVADFLGWISSEVGQRIVTSILSAGIILIAGSLIYIVVQSWVEYRLDPPKGSKPSAR
ERTLLSLFRNAFTVALGVLTCMLVLSELGVNIAPLLAGAGILGLAVGFGAQKLVQDIITGAFIQFENAMNEGDVVTAGGV
TGTVERLTIRSVSLRSLDGAYHLIPFSSVDSVSNFMKNFSYHVANIGVDYGVSVPEVKRAMQDAFERLKKTEEGEHIIGE
LEMHGVTEFGDSAIMVRARIKTQAGRQWAIGRLYNEIIKELFEERGIEIPFPHVTLNVSNEDLARLTKPLMDSTDSSEEA
MNSPAKAKPRAPRNDGERPAVAAKRLRSRRPLQDGPPDDEHDLAEQQA

Sequences:

>Translated_768_residues
MRILALLFLLICASPVAAQSANGASGAEAAESPGDVEALIQILENDQARTRLIQTLRQAETEEAAEEATPTGVLQIGEYA
RAAVESSAAFISAVVRLSGDISDVLTGTTTVDFSIIWNAVRTVIVVAVVTFSAFFLLRLGFLRIQRALAAAAAGSGPLRR
SGLILASALFDTATVLLAWAAGYVPAIYFDLADRAGGGQTLFLGAFLSVELAKVVARVLLAPRWPALRFLRIGDTTSAYW
YFWSSRLLSILGYAFLFLAPLLASGVSYGAAQVLRAFVLFCALTMACIIIMQNRDLVRSWLMLGAERVKSEVISRALSIL
ARFWNVVAIAYLILIFGLWLADHEAALPFVLTATAQTFIAIAIGTALTMAVTRIAAGGMHLPDDIRTRVPLLEQRLNAFV
PNVLRVTRGVIVIGVIIASAQIWLVADFLGWISSEVGQRIVTSILSAGIILIAGSLIYIVVQSWVEYRLDPPKGSKPSAR
ERTLLSLFRNAFTVALGVLTCMLVLSELGVNIAPLLAGAGILGLAVGFGAQKLVQDIITGAFIQFENAMNEGDVVTAGGV
TGTVERLTIRSVSLRSLDGAYHLIPFSSVDSVSNFMKNFSYHVANIGVDYGVSVPEVKRAMQDAFERLKKTEEGEHIIGE
LEMHGVTEFGDSAIMVRARIKTQAGRQWAIGRLYNEIIKELFEERGIEIPFPHVTLNVSNEDLARLTKPLMDSTDSSEEA
MNSPAKAKPRAPRNDGERPAVAAKRLRSRRPLQDGPPDDEHDLAEQQA
>Mature_768_residues
MRILALLFLLICASPVAAQSANGASGAEAAESPGDVEALIQILENDQARTRLIQTLRQAETEEAAEEATPTGVLQIGEYA
RAAVESSAAFISAVVRLSGDISDVLTGTTTVDFSIIWNAVRTVIVVAVVTFSAFFLLRLGFLRIQRALAAAAAGSGPLRR
SGLILASALFDTATVLLAWAAGYVPAIYFDLADRAGGGQTLFLGAFLSVELAKVVARVLLAPRWPALRFLRIGDTTSAYW
YFWSSRLLSILGYAFLFLAPLLASGVSYGAAQVLRAFVLFCALTMACIIIMQNRDLVRSWLMLGAERVKSEVISRALSIL
ARFWNVVAIAYLILIFGLWLADHEAALPFVLTATAQTFIAIAIGTALTMAVTRIAAGGMHLPDDIRTRVPLLEQRLNAFV
PNVLRVTRGVIVIGVIIASAQIWLVADFLGWISSEVGQRIVTSILSAGIILIAGSLIYIVVQSWVEYRLDPPKGSKPSAR
ERTLLSLFRNAFTVALGVLTCMLVLSELGVNIAPLLAGAGILGLAVGFGAQKLVQDIITGAFIQFENAMNEGDVVTAGGV
TGTVERLTIRSVSLRSLDGAYHLIPFSSVDSVSNFMKNFSYHVANIGVDYGVSVPEVKRAMQDAFERLKKTEEGEHIIGE
LEMHGVTEFGDSAIMVRARIKTQAGRQWAIGRLYNEIIKELFEERGIEIPFPHVTLNVSNEDLARLTKPLMDSTDSSEEA
MNSPAKAKPRAPRNDGERPAVAAKRLRSRRPLQDGPPDDEHDLAEQQA

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=721, Percent_Identity=32.1775312066574, Blast_Score=299, Evalue=4e-82,
Organism=Escherichia coli, GI1786670, Length=222, Percent_Identity=28.3783783783784, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1789291, Length=205, Percent_Identity=27.3170731707317, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 82976; Mature: 82976

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILALLFLLICASPVAAQSANGASGAEAAESPGDVEALIQILENDQARTRLIQTLRQAE
CHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
TEEAAEEATPTGVLQIGEYARAAVESSAAFISAVVRLSGDISDVLTGTTTVDFSIIWNAV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHH
RTVIVVAVVTFSAFFLLRLGFLRIQRALAAAAAGSGPLRRSGLILASALFDTATVLLAWA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AGYVPAIYFDLADRAGGGQTLFLGAFLSVELAKVVARVLLAPRWPALRFLRIGDTTSAYW
HHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCCHHH
YFWSSRLLSILGYAFLFLAPLLASGVSYGAAQVLRAFVLFCALTMACIIIMQNRDLVRSW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LMLGAERVKSEVISRALSILARFWNVVAIAYLILIFGLWLADHEAALPFVLTATAQTFIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IAIGTALTMAVTRIAAGGMHLPDDIRTRVPLLEQRLNAFVPNVLRVTRGVIVIGVIIASA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIWLVADFLGWISSEVGQRIVTSILSAGIILIAGSLIYIVVQSWVEYRLDPPKGSKPSAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
ERTLLSLFRNAFTVALGVLTCMLVLSELGVNIAPLLAGAGILGLAVGFGAQKLVQDIITG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHCCHHHHHHHHHHH
AFIQFENAMNEGDVVTAGGVTGTVERLTIRSVSLRSLDGAYHLIPFSSVDSVSNFMKNFS
HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
YHVANIGVDYGVSVPEVKRAMQDAFERLKKTEEGEHIIGELEMHGVTEFGDSAIMVRARI
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHCCCCEEEEEEHH
KTQAGRQWAIGRLYNEIIKELFEERGIEIPFPHVTLNVSNEDLARLTKPLMDSTDSSEEA
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCHHH
MNSPAKAKPRAPRNDGERPAVAAKRLRSRRPLQDGPPDDEHDLAEQQA
HCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure
MRILALLFLLICASPVAAQSANGASGAEAAESPGDVEALIQILENDQARTRLIQTLRQAE
CHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
TEEAAEEATPTGVLQIGEYARAAVESSAAFISAVVRLSGDISDVLTGTTTVDFSIIWNAV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHH
RTVIVVAVVTFSAFFLLRLGFLRIQRALAAAAAGSGPLRRSGLILASALFDTATVLLAWA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AGYVPAIYFDLADRAGGGQTLFLGAFLSVELAKVVARVLLAPRWPALRFLRIGDTTSAYW
HHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCCHHH
YFWSSRLLSILGYAFLFLAPLLASGVSYGAAQVLRAFVLFCALTMACIIIMQNRDLVRSW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LMLGAERVKSEVISRALSILARFWNVVAIAYLILIFGLWLADHEAALPFVLTATAQTFIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IAIGTALTMAVTRIAAGGMHLPDDIRTRVPLLEQRLNAFVPNVLRVTRGVIVIGVIIASA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIWLVADFLGWISSEVGQRIVTSILSAGIILIAGSLIYIVVQSWVEYRLDPPKGSKPSAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
ERTLLSLFRNAFTVALGVLTCMLVLSELGVNIAPLLAGAGILGLAVGFGAQKLVQDIITG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHCCHHHHHHHHHHH
AFIQFENAMNEGDVVTAGGVTGTVERLTIRSVSLRSLDGAYHLIPFSSVDSVSNFMKNFS
HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
YHVANIGVDYGVSVPEVKRAMQDAFERLKKTEEGEHIIGELEMHGVTEFGDSAIMVRARI
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHCCCCEEEEEEHH
KTQAGRQWAIGRLYNEIIKELFEERGIEIPFPHVTLNVSNEDLARLTKPLMDSTDSSEEA
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCHHH
MNSPAKAKPRAPRNDGERPAVAAKRLRSRRPLQDGPPDDEHDLAEQQA
HCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]