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The map label for this gene is yiaD [H]

Identifier: 110633615

GI number: 110633615

Start: 1355616

End: 1356269

Strand: Direct

Name: yiaD [H]

Synonym: Meso_1262

Alternate gene names: 110633615

Gene position: 1355616-1356269 (Clockwise)

Preceding gene: 110633612

Following gene: 110633617

Centisome position: 30.72

GC content: 63.76

Gene sequence:

>654_bases
ATGCTGAAAAGAGTGATTGCTGCCGCCATTGCGGGAGCGCTGGTCACAGGGTGCACCACCGACCCCTATACGGGACAACA
AAAGATGTCCAACGCGGCCGGAGGGGCTGCGCTCGGAGCGTTGGCGGGCGCTGGCCTTGGGCTTCTTGCAGGGGGCAATG
ATCGCCGCAACGCGCTTTTGGGCGCGGGCATCGGCGCGCTCGCGGGAGGCGGCATCGGCCTTTATATGGATCAGCAGGAG
GCGCAGCTGCGTGCCCAGCTCCAGGGGACAGGCGTCAGCGTCACGCGTCAGGGCGACTACATCATCCTGAACATGCCGTC
CAACATCACCTTTGCCACCGATTCCGCCGATATCCAGCCGGCCTTCTACCAGACGCTGAATTCGGTGGCGCTCGTTTTGA
AGCGCTATAACCAGACACTTGTCGACGTCTACGGTCACACGGATTCGACCGGCAGCCTGCAGCACAATATGCAGCTGTCG
CAGCGCCGCGCCGCATCGGTGGCGGATTATCTGATCGCCCAGGGAACGGACAGCCGGCGCTTTGCCGTCATCGGCCAGGG
GCCCTCACAGCCGATCGCCTCGAATGCGACGCCAGAAGGCAGGGCACAGAACCGTCGCGTGGAGATTCGTCTCGCTCCGC
TTACCGCGGGCTAG

Upstream 100 bases:

>100_bases
TCCGCGCCTGCCCGATTTTCGAACATTTTATGCTAAAGCTGAGGCGCATAACTGATTCTCCGCTGGCGGGGCGGAGGAAA
CCGATCAGGAGAGGATGCCG

Downstream 100 bases:

>100_bases
AGCCGTTCAGTAATTTTTTTGATTTTGACATGAAAGCCGGGTGGAACACCCCGGCTTTCATTTTGCCTGGAACGTCCCGG
CGGCAGGACAGCAGCTCCAC

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MLKRVIAAAIAGALVTGCTTDPYTGQQKMSNAAGGAALGALAGAGLGLLAGGNDRRNALLGAGIGALAGGGIGLYMDQQE
AQLRAQLQGTGVSVTRQGDYIILNMPSNITFATDSADIQPAFYQTLNSVALVLKRYNQTLVDVYGHTDSTGSLQHNMQLS
QRRAASVADYLIAQGTDSRRFAVIGQGPSQPIASNATPEGRAQNRRVEIRLAPLTAG

Sequences:

>Translated_217_residues
MLKRVIAAAIAGALVTGCTTDPYTGQQKMSNAAGGAALGALAGAGLGLLAGGNDRRNALLGAGIGALAGGGIGLYMDQQE
AQLRAQLQGTGVSVTRQGDYIILNMPSNITFATDSADIQPAFYQTLNSVALVLKRYNQTLVDVYGHTDSTGSLQHNMQLS
QRRAASVADYLIAQGTDSRRFAVIGQGPSQPIASNATPEGRAQNRRVEIRLAPLTAG
>Mature_217_residues
MLKRVIAAAIAGALVTGCTTDPYTGQQKMSNAAGGAALGALAGAGLGLLAGGNDRRNALLGAGIGALAGGGIGLYMDQQE
AQLRAQLQGTGVSVTRQGDYIILNMPSNITFATDSADIQPAFYQTLNSVALVLKRYNQTLVDVYGHTDSTGSLQHNMQLS
QRRAASVADYLIAQGTDSRRFAVIGQGPSQPIASNATPEGRAQNRRVEIRLAPLTAG

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=219, Percent_Identity=55.7077625570776, Blast_Score=210, Evalue=5e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22428; Mature: 22428

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRVIAAAIAGALVTGCTTDPYTGQQKMSNAAGGAALGALAGAGLGLLAGGNDRRNALL
CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHCCCEEEEECCCCCCCEEE
GAGIGALAGGGIGLYMDQQEAQLRAQLQGTGVSVTRQGDYIILNMPSNITFATDSADIQP
CCCHHHHCCCCEEEEECHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEEECCCCCCCH
AFYQTLNSVALVLKRYNQTLVDVYGHTDSTGSLQHNMQLSQRRAASVADYLIAQGTDSRR
HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
FAVIGQGPSQPIASNATPEGRAQNRRVEIRLAPLTAG
EEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
>Mature Secondary Structure
MLKRVIAAAIAGALVTGCTTDPYTGQQKMSNAAGGAALGALAGAGLGLLAGGNDRRNALL
CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHCCCEEEEECCCCCCCEEE
GAGIGALAGGGIGLYMDQQEAQLRAQLQGTGVSVTRQGDYIILNMPSNITFATDSADIQP
CCCHHHHCCCCEEEEECHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEEECCCCCCCH
AFYQTLNSVALVLKRYNQTLVDVYGHTDSTGSLQHNMQLSQRRAASVADYLIAQGTDSRR
HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
FAVIGQGPSQPIASNATPEGRAQNRRVEIRLAPLTAG
EEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]