BacMap

Definition	Mesorhizobium sp. BNC1, complete genome.
Accession	NC_008254
Length	4,412,446

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The map label for this gene is ygfF [H]

Identifier: 110633606

GI number: 110633606

Start: 1346445

End: 1347188

Strand: Reverse

Name: ygfF [H]

Synonym: Meso_1253

Alternate gene names: 110633606

Gene position: 1347188-1346445 (Counterclockwise)

Preceding gene: 110633607

Following gene: 110633603

Centisome position: 30.53

GC content: 65.46

Gene sequence:

>744_bases
ATGACATCCATTCTCATTACCGGCGGCAGCCGAGGCATCGGACGCGCAACCGCTCTGCTGGCGGCGCAAAGCGGCTGGGC
CGTGGCAATCAATTATCTCGGCAACGCTGCCGCTGCGGAGGAGGTCGTCGCCGAGATCAAAGCCGGAGGCGGTCGAGCCT
GCGCGGTGCAGGGAAACGTGGCGGCAGAAAATGACGTCATCGCAATGCACGAAGTTGCGGAGCGGGAGCTGGGTGGGCTT
ACCGGCGTCGTTATCAATGCCGGCATTGTCGGGCCGTCCCGCCCCCTGGTGGATATCGAGCTAAACCGGATCCGCCGCAT
CTTCGAGGTCAACACAATCGGCGCCTATCTTTGCGCGCGGGAAGCCGCGCGCCGGCTTGCCCGGAGCCGCGGCGGAACGG
GAGGCTCGATCGTCCTGGTCTCTTCAATGGCGTCGCGTCTCGGCTCCCCTTTCGAATATGTGGACTATGCCGGCTCGAAG
GGAGCGGTGGACACTCTCACCATCGGACTGGCCAAGGAGATGGGCGGCGAAGGTGTGCGGGTGAATGCCGTCAGGCCAGG
GCTGATCGAAACGGAGATCCACGCGAGCGGCGGCCAGCCGGATCGCGCACAGCGGCTTGGCGCTGCTTCCCCGCTCGGAC
GCGCAGGCGAGGCGCGGGAAGTGGCCGAGGCGATTGTCTGGCTTCTGAGCGACGCCTCATCGTATGTCACCGGCAGCTTC
ATCGATGTGGCCGGCGGCCGATAA

Upstream 100 bases:

>100_bases
GGCGTCGGCAGCGCATAGCTGCGATGCAGGTTCGCATATTGTAGCAGAGCCAATGGGGCGGCATCCTGACAAACGGTCAG
GAGGCAGGAGGAGCACCCCA

Downstream 100 bases:

>100_bases
TCGCTTCTGCGCCATTCAACAAACTAAAATTTGGCAGGAATAAAATTCTTTTGTAACATTGTGACGAGCTGAAATGGGCA
TTCATAGTGTGGGGAACCGG

Product: glucose-1-dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MTSILITGGSRGIGRATALLAAQSGWAVAINYLGNAAAAEEVVAEIKAGGGRACAVQGNVAAENDVIAMHEVAERELGGL
TGVVINAGIVGPSRPLVDIELNRIRRIFEVNTIGAYLCAREAARRLARSRGGTGGSIVLVSSMASRLGSPFEYVDYAGSK
GAVDTLTIGLAKEMGGEGVRVNAVRPGLIETEIHASGGQPDRAQRLGAASPLGRAGEAREVAEAIVWLLSDASSYVTGSF
IDVAGGR

Sequences:

>Translated_247_residues
MTSILITGGSRGIGRATALLAAQSGWAVAINYLGNAAAAEEVVAEIKAGGGRACAVQGNVAAENDVIAMHEVAERELGGL
TGVVINAGIVGPSRPLVDIELNRIRRIFEVNTIGAYLCAREAARRLARSRGGTGGSIVLVSSMASRLGSPFEYVDYAGSK
GAVDTLTIGLAKEMGGEGVRVNAVRPGLIETEIHASGGQPDRAQRLGAASPLGRAGEAREVAEAIVWLLSDASSYVTGSF
IDVAGGR
>Mature_246_residues
TSILITGGSRGIGRATALLAAQSGWAVAINYLGNAAAAEEVVAEIKAGGGRACAVQGNVAAENDVIAMHEVAERELGGLT
GVVINAGIVGPSRPLVDIELNRIRRIFEVNTIGAYLCAREAARRLARSRGGTGGSIVLVSSMASRLGSPFEYVDYAGSKG
AVDTLTIGLAKEMGGEGVRVNAVRPGLIETEIHASGGQPDRAQRLGAASPLGRAGEAREVAEAIVWLLSDASSYVTGSFI
DVAGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=34.8360655737705, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=33.8709677419355, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=30.5220883534137, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI59889578, Length=218, Percent_Identity=32.5688073394495, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI109715829, Length=233, Percent_Identity=27.8969957081545, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=30.241935483871, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=27.734375, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI40254986, Length=249, Percent_Identity=28.5140562248996, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI32483357, Length=243, Percent_Identity=27.5720164609054, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=54.6558704453441, Blast_Score=268, Evalue=2e-73,
Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=34.6938775510204, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=33.0645161290323, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787905, Length=242, Percent_Identity=32.2314049586777, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=30.2040816326531, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI2367365, Length=243, Percent_Identity=31.6872427983539, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=30.4526748971193, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=28.3400809716599, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787891, Length=247, Percent_Identity=27.9352226720648, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=26.953125, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=27.8225806451613, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786812, Length=261, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787526, Length=252, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=28.2868525896414, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=33.469387755102, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=33.59375, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=265, Percent_Identity=32.8301886792453, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=32.3770491803279, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=242, Percent_Identity=31.404958677686, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=29.5275590551181, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=29.8804780876494, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=257, Percent_Identity=30.7392996108949, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=31.1787072243346, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=28.0769230769231, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=29.2307692307692, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=29.5719844357977, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=218, Percent_Identity=28.4403669724771, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=258, Percent_Identity=30.6201550387597, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=29.7397769516729, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=30.1526717557252, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=248, Percent_Identity=26.2096774193548, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=26.865671641791, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=31.8181818181818, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=259, Percent_Identity=30.5019305019305, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=257, Percent_Identity=29.5719844357977, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=257, Percent_Identity=28.0155642023346, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=28.8461538461538, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=29.4339622641509, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=259, Percent_Identity=28.957528957529, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=28.515625, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=244, Percent_Identity=25.4098360655738, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=257, Percent_Identity=29.9610894941634, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=29.6577946768061, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=154, Percent_Identity=32.4675324675325, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322861, Length=256, Percent_Identity=27.734375, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=33.4661354581673, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=34, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=34.1269841269841, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=33.0612244897959, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=32.9365079365079, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24644337, Length=182, Percent_Identity=36.2637362637363, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=30.7377049180328, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24643142, Length=170, Percent_Identity=35.2941176470588, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24640492, Length=192, Percent_Identity=30.2083333333333, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI17737361, Length=231, Percent_Identity=29.4372294372294, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21357673, Length=215, Percent_Identity=28.3720930232558, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25240; Mature: 25109

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSILITGGSRGIGRATALLAAQSGWAVAINYLGNAAAAEEVVAEIKAGGGRACAVQGNV
CCEEEEECCCCCCCHHHHHEEECCCCEEEEEHHCCHHHHHHHHHHHHCCCCEEEEEECCC
AAENDVIAMHEVAERELGGLTGVVINAGIVGPSRPLVDIELNRIRRIFEVNTIGAYLCAR
CCCCCEEHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
EAARRLARSRGGTGGSIVLVSSMASRLGSPFEYVDYAGSKGAVDTLTIGLAKEMGGEGVR
HHHHHHHHHCCCCCCEEEEHHHHHHHHCCCHHHHHCCCCCCCHHHHEEHHHHHCCCCCEE
VNAVRPGLIETEIHASGGQPDRAQRLGAASPLGRAGEAREVAEAIVWLLSDASSYVTGSF
EEEECCCEEEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCE
IDVAGGR
EECCCCC
>Mature Secondary Structure 
TSILITGGSRGIGRATALLAAQSGWAVAINYLGNAAAAEEVVAEIKAGGGRACAVQGNV
CEEEEECCCCCCCHHHHHEEECCCCEEEEEHHCCHHHHHHHHHHHHCCCCEEEEEECCC
AAENDVIAMHEVAERELGGLTGVVINAGIVGPSRPLVDIELNRIRRIFEVNTIGAYLCAR
CCCCCEEHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
EAARRLARSRGGTGGSIVLVSSMASRLGSPFEYVDYAGSKGAVDTLTIGLAKEMGGEGVR
HHHHHHHHHCCCCCCEEEEHHHHHHHHCCCHHHHHCCCCCCCHHHHEEHHHHHCCCCCEE
VNAVRPGLIETEIHASGGQPDRAQRLGAASPLGRAGEAREVAEAIVWLLSDASSYVTGSF
EEEECCCEEEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCE
IDVAGGR
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]