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The map label for this gene is yoqW [H]

Identifier: 110633601

GI number: 110633601

Start: 1343286

End: 1343966

Strand: Reverse

Name: yoqW [H]

Synonym: Meso_1248

Alternate gene names: 110633601

Gene position: 1343966-1343286 (Counterclockwise)

Preceding gene: 110633603

Following gene: 110633600

Centisome position: 30.46

GC content: 58.15

Gene sequence:

>681_bases
ATGTGCGGGCGCTTCACCCGATATCTAACTTGGTCGGAGATCCATCGGCTCTACCGGCTGACGCTCGATTGGGAAAAGCA
GAAGAACGACGAGCCGCGCTACAACATCTGCCCGACTGAGGACGTTGATTTCGTGACCGCCGGCGAAAACGGTTCGCATC
GTCTAAAGACCGGCCGATGGTGGCTGGTCCCGTGGTGGGCCAAGGAAATGCCCAAGGCAGCGATGTTCAATGCACGCATT
GAGACCGCCGACACCTCCGGCGCGTTCAAGGATGCTTGGAAGTCAAAACGCTGCCTGATCCCAGCCGACGGCTTTTACGA
GTGGACAAAGAGCCCGGCCGATGGCGGCAAGGACCCGTGGCACATCCATTTGCCGGACCATCAGCCTTTCAGCTTTGCTG
GATTGTGGGCGTACAATGAAAAGCTGGGCGTGACGAGCTGCACCATTATCACGATGCCCGCGGAAGAACCCGTGACGCAG
ATCCACGACCGCCAACCGGCCATACTGCACCCAGCGGTCTATGACCAGTGGCTTGATCCCGTTACGCCATCAGAACGTCT
GAAACCTCTCGTCCGCGAACACAATCTGGATGGTCAGCTTCAGTTCTACCGCGTTGGACGCGAAGTGAATGCGACGAAGT
TCCAAGGCGAGCAGTGCATTGCTCCGGTTAACCCGCTCTAG

Upstream 100 bases:

>100_bases
CCCTATGAAAGAGGAATGATTTCCTCTTCCGTCAAGGCTCCTCTTGACTCTTTTGTTCTCATTCCGTTCACTGTGACCAT
CCTGCTACGGAGGCAATCGT

Downstream 100 bases:

>100_bases
TGTGGCGACGCGGCTGAATCTAAGGTGAGATGATTATAAGTATCTGGGATGATTTTGATTTTAACTGGCACCTCATGAGT
TTTTAGTCGTTAGTTAACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MCGRFTRYLTWSEIHRLYRLTLDWEKQKNDEPRYNICPTEDVDFVTAGENGSHRLKTGRWWLVPWWAKEMPKAAMFNARI
ETADTSGAFKDAWKSKRCLIPADGFYEWTKSPADGGKDPWHIHLPDHQPFSFAGLWAYNEKLGVTSCTIITMPAEEPVTQ
IHDRQPAILHPAVYDQWLDPVTPSERLKPLVREHNLDGQLQFYRVGREVNATKFQGEQCIAPVNPL

Sequences:

>Translated_226_residues
MCGRFTRYLTWSEIHRLYRLTLDWEKQKNDEPRYNICPTEDVDFVTAGENGSHRLKTGRWWLVPWWAKEMPKAAMFNARI
ETADTSGAFKDAWKSKRCLIPADGFYEWTKSPADGGKDPWHIHLPDHQPFSFAGLWAYNEKLGVTSCTIITMPAEEPVTQ
IHDRQPAILHPAVYDQWLDPVTPSERLKPLVREHNLDGQLQFYRVGREVNATKFQGEQCIAPVNPL
>Mature_226_residues
MCGRFTRYLTWSEIHRLYRLTLDWEKQKNDEPRYNICPTEDVDFVTAGENGSHRLKTGRWWLVPWWAKEMPKAAMFNARI
ETADTSGAFKDAWKSKRCLIPADGFYEWTKSPADGGKDPWHIHLPDHQPFSFAGLWAYNEKLGVTSCTIITMPAEEPVTQ
IHDRQPAILHPAVYDQWLDPVTPSERLKPLVREHNLDGQLQFYRVGREVNATKFQGEQCIAPVNPL

Specific function: Unknown

COG id: COG2135

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0361 family [H]

Homologues:

Organism=Homo sapiens, GI54607106, Length=276, Percent_Identity=26.8115942028986, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI54607104, Length=276, Percent_Identity=26.8115942028986, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI48994894, Length=228, Percent_Identity=29.3859649122807, Blast_Score=90, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6323761, Length=259, Percent_Identity=27.4131274131274, Blast_Score=89, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003738 [H]

Pfam domain/function: PF02586 DUF159 [H]

EC number: NA

Molecular weight: Translated: 26195; Mature: 26195

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCGRFTRYLTWSEIHRLYRLTLDWEKQKNDEPRYNICPTEDVDFVTAGENGSHRLKTGRW
CCCCHHHHCCHHHHHHHHHEEECHHHCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCE
WLVPWWAKEMPKAAMFNARIETADTSGAFKDAWKSKRCLIPADGFYEWTKSPADGGKDPW
EEEEHHHHHCCHHHHHCCEEECCCCCCCHHHHHCCCCEEECCCCCHHHCCCCCCCCCCCE
HIHLPDHQPFSFAGLWAYNEKLGVTSCTIITMPAEEPVTQIHDRQPAILHPAVYDQWLDP
EEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHCCCCCEECHHHHHHHCCC
VTPSERLKPLVREHNLDGQLQFYRVGREVNATKFQGEQCIAPVNPL
CCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure
MCGRFTRYLTWSEIHRLYRLTLDWEKQKNDEPRYNICPTEDVDFVTAGENGSHRLKTGRW
CCCCHHHHCCHHHHHHHHHEEECHHHCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCE
WLVPWWAKEMPKAAMFNARIETADTSGAFKDAWKSKRCLIPADGFYEWTKSPADGGKDPW
EEEEHHHHHCCHHHHHCCEEECCCCCCCHHHHHCCCCEEECCCCCHHHCCCCCCCCCCCE
HIHLPDHQPFSFAGLWAYNEKLGVTSCTIITMPAEEPVTQIHDRQPAILHPAVYDQWLDP
EEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHCCCCCEECHHHHHHHCCC
VTPSERLKPLVREHNLDGQLQFYRVGREVNATKFQGEQCIAPVNPL
CCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]