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The map label for this gene is xerC [H]

Identifier: 110633561

GI number: 110633561

Start: 1310462

End: 1311892

Strand: Direct

Name: xerC [H]

Synonym: Meso_1208

Alternate gene names: 110633561

Gene position: 1310462-1311892 (Clockwise)

Preceding gene: 110633560

Following gene: 110633564

Centisome position: 29.7

GC content: 56.6

Gene sequence:

>1431_bases
ATGGCAAAGTACGATCTTACGTCACAGCAGATCAGAGACAGTCTCGCTCCTAGGAGGGCTCCATATTGGTACGAACTTGG
CCCGGGCCGCCACGTCGGGGTTCTCTGTAAGGGCAATACCAAAGCCATCTGGAAGGCGCGCTACCGAGCCAGGAATGGTC
TCTATCATGAGACTTCGCTGGGGCCGATGGAAAGCGCCCGCTATCCCGGTCTCACCTTCGAGGGGGCAGTTAGGGAAGCC
GAGCAATGGTTTGCCTCGACTTCAATTAGCGCGAAGGCCATTTCGCGCCATATCGTCCGGTACAACGGCCAACTGATCTA
CTGCCCTATCGGGCCGGTCTATACGGTTGGGCATGCGCTCCGCGACTATCTTGAATGGAAGCGACTGGCTGCAGCGCCGA
CAACCTTCTATTCGGTCCTTACCATGATCAATCACCACTTGGCGGGCCGCGTTGCGAGCGTGCCATTGGCTGATTTCAAT
GGGCGGCACTTTCACCAGCTATGCGTCGACGTTCTGGAAACGCCCCCAAAATACGGGAATCGTGCCATCGGTGCGCGTCG
CGATATCAGCGATTTGGATCCCGAGGCGCTGCGCAAACGAAAGAAGACGATGAATGCGCTGACCAGCACCCTGCGTGGTG
CATTTGCGCTAGCTTGGGACAATGGCGAGATTGATACTGATCGCCCGCAACGGTGCCTGAGGCATCTTCCGAACGTCGAC
CGTCCACGCATGGTCTTCCTCAGAAGAGAAGAATGCAAGCGGCTTATAGAGGCGGCCCGTCCGGACCTCCGGGAGCTTAT
TCTTGGCGCCCTTTATACCGGCTGCAGAGTGCGAGAATTGGTCTATCTCAAAGTTGCAGACGTTGGCCGTGAGGGTTTCG
GAATCTACGTTTCTCCATCGAAAAACTATAGGCCGCGGTTCGTCCTCCTGCCGGAAGAAGGGATGGCTTTCTTTCTTTCA
CTCTGCCGTAAGCGGCAGGGCCACGAATATGTTTTCCGAAACCAGGACGGGCGCCCCTGGAGCGAGCGTTACAAACACCT
GTTTCGCGATCTGACCGATGCCTGCGGGCTCCCGAAGAGTACGGTGTTTCACAGTCTCAGGCACACTTATGCCAGCCAAC
TGGTGCAGGCTGGAATGCAGTTGTCCATTGTGGCAAAGCAGCTTGGCCACGCCGACATTGCCACGGTGGATCGGACGTAT
GGTCACCTAGCACCGCAGCTTTCGGAGGCTGAAGTTCAGCGGCGGTTTTCGCCGCTAAGGTCTGAATACATTGAGATGGC
AGCGGTCATGAAGCCTGCTCTGGATGGAATGAGGGAGCGATTCGGCAATGGCGATTGGCGTGCTTACGCCGAAGTGAACC
ACGATACGTCTTGGCCAAGGTCCAACTTTTCGAAATTCAGGGGCGAGTTGTTGTCGCAATTGCCTCGCTAG

Upstream 100 bases:

>100_bases
GCCGGAGAGGACTAAAGCAGAAGGAGCGGGAAGTTATTTAGGCGACAGCGCCACGCGAGCGTGTGATCCTTACGGCCATG
CAGGCCTGGAGGATCAGCGG

Downstream 100 bases:

>100_bases
TGGTCCTGCATGATATCACCAGCCAGGCCAGGTGGAATCCACCATTGCTAGGTGGCTGCACTGATAATCAGGAACGAACT
GACCATTAGCCCGATCGCGG

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MAKYDLTSQQIRDSLAPRRAPYWYELGPGRHVGVLCKGNTKAIWKARYRARNGLYHETSLGPMESARYPGLTFEGAVREA
EQWFASTSISAKAISRHIVRYNGQLIYCPIGPVYTVGHALRDYLEWKRLAAAPTTFYSVLTMINHHLAGRVASVPLADFN
GRHFHQLCVDVLETPPKYGNRAIGARRDISDLDPEALRKRKKTMNALTSTLRGAFALAWDNGEIDTDRPQRCLRHLPNVD
RPRMVFLRREECKRLIEAARPDLRELILGALYTGCRVRELVYLKVADVGREGFGIYVSPSKNYRPRFVLLPEEGMAFFLS
LCRKRQGHEYVFRNQDGRPWSERYKHLFRDLTDACGLPKSTVFHSLRHTYASQLVQAGMQLSIVAKQLGHADIATVDRTY
GHLAPQLSEAEVQRRFSPLRSEYIEMAAVMKPALDGMRERFGNGDWRAYAEVNHDTSWPRSNFSKFRGELLSQLPR

Sequences:

>Translated_476_residues
MAKYDLTSQQIRDSLAPRRAPYWYELGPGRHVGVLCKGNTKAIWKARYRARNGLYHETSLGPMESARYPGLTFEGAVREA
EQWFASTSISAKAISRHIVRYNGQLIYCPIGPVYTVGHALRDYLEWKRLAAAPTTFYSVLTMINHHLAGRVASVPLADFN
GRHFHQLCVDVLETPPKYGNRAIGARRDISDLDPEALRKRKKTMNALTSTLRGAFALAWDNGEIDTDRPQRCLRHLPNVD
RPRMVFLRREECKRLIEAARPDLRELILGALYTGCRVRELVYLKVADVGREGFGIYVSPSKNYRPRFVLLPEEGMAFFLS
LCRKRQGHEYVFRNQDGRPWSERYKHLFRDLTDACGLPKSTVFHSLRHTYASQLVQAGMQLSIVAKQLGHADIATVDRTY
GHLAPQLSEAEVQRRFSPLRSEYIEMAAVMKPALDGMRERFGNGDWRAYAEVNHDTSWPRSNFSKFRGELLSQLPR
>Mature_475_residues
AKYDLTSQQIRDSLAPRRAPYWYELGPGRHVGVLCKGNTKAIWKARYRARNGLYHETSLGPMESARYPGLTFEGAVREAE
QWFASTSISAKAISRHIVRYNGQLIYCPIGPVYTVGHALRDYLEWKRLAAAPTTFYSVLTMINHHLAGRVASVPLADFNG
RHFHQLCVDVLETPPKYGNRAIGARRDISDLDPEALRKRKKTMNALTSTLRGAFALAWDNGEIDTDRPQRCLRHLPNVDR
PRMVFLRREECKRLIEAARPDLRELILGALYTGCRVRELVYLKVADVGREGFGIYVSPSKNYRPRFVLLPEEGMAFFLSL
CRKRQGHEYVFRNQDGRPWSERYKHLFRDLTDACGLPKSTVFHSLRHTYASQLVQAGMQLSIVAKQLGHADIATVDRTYG
HLAPQLSEAEVQRRFSPLRSEYIEMAAVMKPALDGMRERFGNGDWRAYAEVNHDTSWPRSNFSKFRGELLSQLPR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 54484; Mature: 54353

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKYDLTSQQIRDSLAPRRAPYWYELGPGRHVGVLCKGNTKAIWKARYRARNGLYHETSL
CCCCCCCHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCC
GPMESARYPGLTFEGAVREAEQWFASTSISAKAISRHIVRYNGQLIYCPIGPVYTVGHAL
CCHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH
RDYLEWKRLAAAPTTFYSVLTMINHHLAGRVASVPLADFNGRHFHQLCVDVLETPPKYGN
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
RAIGARRDISDLDPEALRKRKKTMNALTSTLRGAFALAWDNGEIDTDRPQRCLRHLPNVD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCC
RPRMVFLRREECKRLIEAARPDLRELILGALYTGCRVRELVYLKVADVGREGFGIYVSPS
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHEEEEHHCCCCCCEEEECCC
KNYRPRFVLLPEEGMAFFLSLCRKRQGHEYVFRNQDGRPWSERYKHLFRDLTDACGLPKS
CCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHH
TVFHSLRHTYASQLVQAGMQLSIVAKQLGHADIATVDRTYGHLAPQLSEAEVQRRFSPLR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
SEYIEMAAVMKPALDGMRERFGNGDWRAYAEVNHDTSWPRSNFSKFRGELLSQLPR
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKYDLTSQQIRDSLAPRRAPYWYELGPGRHVGVLCKGNTKAIWKARYRARNGLYHETSL
CCCCCCHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCC
GPMESARYPGLTFEGAVREAEQWFASTSISAKAISRHIVRYNGQLIYCPIGPVYTVGHAL
CCHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH
RDYLEWKRLAAAPTTFYSVLTMINHHLAGRVASVPLADFNGRHFHQLCVDVLETPPKYGN
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
RAIGARRDISDLDPEALRKRKKTMNALTSTLRGAFALAWDNGEIDTDRPQRCLRHLPNVD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCC
RPRMVFLRREECKRLIEAARPDLRELILGALYTGCRVRELVYLKVADVGREGFGIYVSPS
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHEEEEHHCCCCCCEEEECCC
KNYRPRFVLLPEEGMAFFLSLCRKRQGHEYVFRNQDGRPWSERYKHLFRDLTDACGLPKS
CCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHH
TVFHSLRHTYASQLVQAGMQLSIVAKQLGHADIATVDRTYGHLAPQLSEAEVQRRFSPLR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
SEYIEMAAVMKPALDGMRERFGNGDWRAYAEVNHDTSWPRSNFSKFRGELLSQLPR
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA