Click here to switch to the map view.

The map label for this gene is yhdJ [C]

Identifier: 110633553

GI number: 110633553

Start: 1303784

End: 1304704

Strand: Direct

Name: yhdJ [C]

Synonym: Meso_1200

Alternate gene names: 110633553

Gene position: 1303784-1304704 (Clockwise)

Preceding gene: 110633552

Following gene: 110633554

Centisome position: 29.55

GC content: 57.76

Gene sequence:

>921_bases
GTGACGAATGTCATCGACCAGGCCGCAGGCCGAAGCTTCAATGCTTATTGCGCTGACTGCGTGCCGTTCACCGCGGCTCT
GCCTGCCAACAGTATAGATTTCAGCGTCTACTCGCCGCCGTTCTCCTCGCTGTACATCTACAGCGAGAGCGTCGCTGACA
TGGGCAACTGCGCGTCGGATGATGAATTCTTTGAACAATACCGGTTCCTTGTCCGCGAGAAATTTCGTGCAACGCGCCCG
GGGCGCCTGACGGCTATTCACGTCAAGGATCTCGTTTATTATCAGAACTCCAGTGAGCGAGGCACGGCGGGGCTCCGGCC
CTTCTCTGATGATTGCACTCGGCTCCACATCGAAGAGGGATGGGACTTCCATTCCAGGATCACGATCTGGCGCGATCCCG
TTCGCGAGATGCAAAAGACGAAGGCGCACGGTCTGCTTTGGAAGACCCTACGCGCCGACTCCACTTTCTCCCGCATGGGA
TTGCCAGAGTATTTACTCGTGTTCCGGAAGTGGGCGAGTGATGGTGAGGAAGTCCGACCGGTTACCCACACCAAGGAAAC
CTTCCCCGTCGAAGAGTGGCAGCAATACGCCTCACCGGTGTGGAACTATCCGCGCCAAGACCTTCCTGAGACGGACGTGC
TGAACGTCAAGGTTGCTCGTAGCGACAAAGACGAGAAGCACCTTTGCCCAATGCCGCTTAACATCACGCGGCGCGCGCTG
CGCATGTGGTCGAACCGGGGCGATGTCGTCTATTCCCCCTTTATGGGTATCGGGTCTGAGGGCGTTGTATCGATCGAGGA
AGGCCGCAAGTTCATCGGTACAGAGCTCAACCCGGCCTATTTTCGACAGGCGATCAAGAACCTGATCGATGCAGAGGCCT
CGGGTGTCTTCGGTGACCTCTTCGCGGAGGCGGCCGAATGA

Upstream 100 bases:

>100_bases
ACGCCGCCATGCGCCGCGCCCACGAGAGCCGGCAGATCAAGATCGATTACCAGCCAACGCAGCCCATGCAGTTGCCCGTA
TGGATGAGGGGGGAAGCCGC

Downstream 100 bases:

>100_bases
CGCTACGCCAGGATATTTGCTTCCTCCGCAGCCTCAACAAATGCCTGTCTCGCCTGTCCGGGATCGCACTTCCCTTCCAG
GCAGCGCAGCAAAACCTTTC

Product: DNA methylase N-4/N-6

Products: S-Adenosyl-L-Homocysteine; DNA 6-Methylaminopurine. [C]

Alternate protein names: DNA Methylase N-4/N-6 Domain-Containing Protein; Methyltransferase; N6 Adenine-Specific DNA Methyltransferase; Type II Restriction- System DNA Methylase; M4C-Methyltransferase

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MTNVIDQAAGRSFNAYCADCVPFTAALPANSIDFSVYSPPFSSLYIYSESVADMGNCASDDEFFEQYRFLVREKFRATRP
GRLTAIHVKDLVYYQNSSERGTAGLRPFSDDCTRLHIEEGWDFHSRITIWRDPVREMQKTKAHGLLWKTLRADSTFSRMG
LPEYLLVFRKWASDGEEVRPVTHTKETFPVEEWQQYASPVWNYPRQDLPETDVLNVKVARSDKDEKHLCPMPLNITRRAL
RMWSNRGDVVYSPFMGIGSEGVVSIEEGRKFIGTELNPAYFRQAIKNLIDAEASGVFGDLFAEAAE

Sequences:

>Translated_306_residues
MTNVIDQAAGRSFNAYCADCVPFTAALPANSIDFSVYSPPFSSLYIYSESVADMGNCASDDEFFEQYRFLVREKFRATRP
GRLTAIHVKDLVYYQNSSERGTAGLRPFSDDCTRLHIEEGWDFHSRITIWRDPVREMQKTKAHGLLWKTLRADSTFSRMG
LPEYLLVFRKWASDGEEVRPVTHTKETFPVEEWQQYASPVWNYPRQDLPETDVLNVKVARSDKDEKHLCPMPLNITRRAL
RMWSNRGDVVYSPFMGIGSEGVVSIEEGRKFIGTELNPAYFRQAIKNLIDAEASGVFGDLFAEAAE
>Mature_305_residues
TNVIDQAAGRSFNAYCADCVPFTAALPANSIDFSVYSPPFSSLYIYSESVADMGNCASDDEFFEQYRFLVREKFRATRPG
RLTAIHVKDLVYYQNSSERGTAGLRPFSDDCTRLHIEEGWDFHSRITIWRDPVREMQKTKAHGLLWKTLRADSTFSRMGL
PEYLLVFRKWASDGEEVRPVTHTKETFPVEEWQQYASPVWNYPRQDLPETDVLNVKVARSDKDEKHLCPMPLNITRRALR
MWSNRGDVVYSPFMGIGSEGVVSIEEGRKFIGTELNPAYFRQAIKNLIDAEASGVFGDLFAEAAE

Specific function: Unknown

COG id: COG0863

COG function: function code L; DNA modification methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.1.1.72 [C]

Molecular weight: Translated: 34972; Mature: 34840

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNVIDQAAGRSFNAYCADCVPFTAALPANSIDFSVYSPPFSSLYIYSESVADMGNCASD
CCCHHHHHCCCCCCCHHHHHCCHHHHCCCCCCCEEEECCCCCEEEEEEHHHHHCCCCCCC
DEFFEQYRFLVREKFRATRPGRLTAIHVKDLVYYQNSSERGTAGLRPFSDDCTRLHIEEG
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCC
WDFHSRITIWRDPVREMQKTKAHGLLWKTLRADSTFSRMGLPEYLLVFRKWASDGEEVRP
CCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCCCCCCC
VTHTKETFPVEEWQQYASPVWNYPRQDLPETDVLNVKVARSDKDEKHLCPMPLNITRRAL
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH
RMWSNRGDVVYSPFMGIGSEGVVSIEEGRKFIGTELNPAYFRQAIKNLIDAEASGVFGDL
HHHCCCCCEEECCCCCCCCCCEEEHHHCCHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHH
FAEAAE
HHHHCC
>Mature Secondary Structure 
TNVIDQAAGRSFNAYCADCVPFTAALPANSIDFSVYSPPFSSLYIYSESVADMGNCASD
CCHHHHHCCCCCCCHHHHHCCHHHHCCCCCCCEEEECCCCCEEEEEEHHHHHCCCCCCC
DEFFEQYRFLVREKFRATRPGRLTAIHVKDLVYYQNSSERGTAGLRPFSDDCTRLHIEEG
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCC
WDFHSRITIWRDPVREMQKTKAHGLLWKTLRADSTFSRMGLPEYLLVFRKWASDGEEVRP
CCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCCCCCCC
VTHTKETFPVEEWQQYASPVWNYPRQDLPETDVLNVKVARSDKDEKHLCPMPLNITRRAL
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH
RMWSNRGDVVYSPFMGIGSEGVVSIEEGRKFIGTELNPAYFRQAIKNLIDAEASGVFGDL
HHHCCCCCEEECCCCCCCCCCEEEHHHCCHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHH
FAEAAE
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; DNA Adenine; DNA [C]

Specific reaction: S-Adenosyl-L-Methionine + DNA Adenine = S-Adenosyl-L-Homocysteine + DNA 6-Methylaminopurine. Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA