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The map label for this gene is 110633502

Identifier: 110633502

GI number: 110633502

Start: 1255649

End: 1256494

Strand: Direct

Name: 110633502

Synonym: Meso_1149

Alternate gene names: NA

Gene position: 1255649-1256494 (Clockwise)

Preceding gene: 110633501

Following gene: 110633503

Centisome position: 28.46

GC content: 61.58

Gene sequence:

>846_bases
TTGGCGCCGCGTGCTTCCTGGAAGGGTTTCCTGAAGATATCCGAGTTGGCGCTGCCGGTGGCGCTTTACGCGGGGGCAAC
CACGTCCGCCCGCGTGTCATTTCACATCCTCAACAGGAAGACCGGGAATAGGGTCCACCGCCAGTATTTCGACGAGGAAA
CGGATGAGGCGGTCGAGCCGGAGCAGCAGGTCAAGGGCTACGATACGGGCGACAATCAATTCATTATCCTCGAACCGGAG
GAAATCGCGCAGACGGTTCCCGAAAGCGACAAGACTATCCGCATCGAGGCTTTCGTTCCTCTCGATAAGGTTGATGCCGT
CTATTTCGACCGCCCCTATTATCTGGCGCCCTCGGGCGCGGTTGCGACGGATTCCTTCGCGGTGATACGCGAGGGTATGC
GCCGCAAGAAGGTGGCTGCCCTTGCCCGCGCCGTGCTCTTCCGCCGCGTTCGCACGCTCCTGTTGCGCCCGGAAGGACCG
GGGCTCGCTGCCAACACGCTGAACTTCGACTACGAAGTGCGGCCTGCCTCGGAGGTCTTCGACGATCTGCCCGACATCAG
GATCGAAGGCGAAATGCTGGATCTGGCCAAATACATCATCAAAACCAAAAGCGGCGAGTTCGACCCCCACACGTTTGACG
ACCGTTACGACCAGGCATTGGCGGAACTCGTGCGGGCCAAGATGGAGGGCCGCGAGATCAAGCCGCCGAAACCGCCCAAG
GAAACCAAGGTGGTCAACCTGCTTGAGGCTCTGCGCCAAAGCGCGGGAGCAGGCAAGGCACCGAAGAAGACGCGCGCCGG
CACGCGCAAGAAGAGTGCTTCCGGCGAGCGCCGCAAGGCGGGCTGA

Upstream 100 bases:

>100_bases
CAAAATGGGTATGCTGCATCCGCAAGGAGAGAGCTGAGCCAAAGCCGGAACCTTCTCGTTACCCGTCGCGTTTGTTTTTG
TCTTGACAGGGGAGAATCAG

Downstream 100 bases:

>100_bases
TGGCGCTCACCACCTATCGCAGGAAGCGGAACTTTTCAGCTACGCCCGAGCCTCCGGGTGAGGAGAAGGCTTCGCCGCGC
GGCGATAGTTTCGTGATCCA

Product: Ku domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MAPRASWKGFLKISELALPVALYAGATTSARVSFHILNRKTGNRVHRQYFDEETDEAVEPEQQVKGYDTGDNQFIILEPE
EIAQTVPESDKTIRIEAFVPLDKVDAVYFDRPYYLAPSGAVATDSFAVIREGMRRKKVAALARAVLFRRVRTLLLRPEGP
GLAANTLNFDYEVRPASEVFDDLPDIRIEGEMLDLAKYIIKTKSGEFDPHTFDDRYDQALAELVRAKMEGREIKPPKPPK
ETKVVNLLEALRQSAGAGKAPKKTRAGTRKKSASGERRKAG

Sequences:

>Translated_281_residues
MAPRASWKGFLKISELALPVALYAGATTSARVSFHILNRKTGNRVHRQYFDEETDEAVEPEQQVKGYDTGDNQFIILEPE
EIAQTVPESDKTIRIEAFVPLDKVDAVYFDRPYYLAPSGAVATDSFAVIREGMRRKKVAALARAVLFRRVRTLLLRPEGP
GLAANTLNFDYEVRPASEVFDDLPDIRIEGEMLDLAKYIIKTKSGEFDPHTFDDRYDQALAELVRAKMEGREIKPPKPPK
ETKVVNLLEALRQSAGAGKAPKKTRAGTRKKSASGERRKAG
>Mature_280_residues
APRASWKGFLKISELALPVALYAGATTSARVSFHILNRKTGNRVHRQYFDEETDEAVEPEQQVKGYDTGDNQFIILEPEE
IAQTVPESDKTIRIEAFVPLDKVDAVYFDRPYYLAPSGAVATDSFAVIREGMRRKKVAALARAVLFRRVRTLLLRPEGPG
LAANTLNFDYEVRPASEVFDDLPDIRIEGEMLDLAKYIIKTKSGEFDPHTFDDRYDQALAELVRAKMEGREIKPPKPPKE
TKVVNLLEALRQSAGAGKAPKKTRAGTRKKSASGERRKAG

Specific function: Could be involved in DNA repair [H]

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194 [H]

Pfam domain/function: PF02735 Ku [H]

EC number: NA

Molecular weight: Translated: 31434; Mature: 31303

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPRASWKGFLKISELALPVALYAGATTSARVSFHILNRKTGNRVHRQYFDEETDEAVEP
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCHHHCCC
EQQVKGYDTGDNQFIILEPEEIAQTVPESDKTIRIEAFVPLDKVDAVYFDRPYYLAPSGA
HHHHCCCCCCCCEEEEECHHHHHHHCCCCCCEEEEEEECCCCHHCEEEECCCEEECCCCC
VATDSFAVIREGMRRKKVAALARAVLFRRVRTLLLRPEGPGLAANTLNFDYEVRPASEVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEECCHHHHH
DDLPDIRIEGEMLDLAKYIIKTKSGEFDPHTFDDRYDQALAELVRAKMEGREIKPPKPPK
HCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
ETKVVNLLEALRQSAGAGKAPKKTRAGTRKKSASGERRKAG
HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
APRASWKGFLKISELALPVALYAGATTSARVSFHILNRKTGNRVHRQYFDEETDEAVEP
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCHHHCCC
EQQVKGYDTGDNQFIILEPEEIAQTVPESDKTIRIEAFVPLDKVDAVYFDRPYYLAPSGA
HHHHCCCCCCCCEEEEECHHHHHHHCCCCCCEEEEEEECCCCHHCEEEECCCEEECCCCC
VATDSFAVIREGMRRKKVAALARAVLFRRVRTLLLRPEGPGLAANTLNFDYEVRPASEVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEECCHHHHH
DDLPDIRIEGEMLDLAKYIIKTKSGEFDPHTFDDRYDQALAELVRAKMEGREIKPPKPPK
HCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
ETKVVNLLEALRQSAGAGKAPKKTRAGTRKKSASGERRKAG
HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA