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The map label for this gene is ymdB [C]

Identifier: 110633277

GI number: 110633277

Start: 1022624

End: 1023148

Strand: Reverse

Name: ymdB [C]

Synonym: Meso_0923

Alternate gene names: 110633277

Gene position: 1023148-1022624 (Counterclockwise)

Preceding gene: 110633281

Following gene: 110633276

Centisome position: 23.19

GC content: 65.33

Gene sequence:

>525_bases
ATGCCCGTCACAGGCCGCATGACTGCCATCACCGGCGACATCACGAAAATCGAAGCCGACGCCATCGTGAATGCCGCCAA
CCGCTCGCTGCTCGGCGGCGGAGGCGTGGACGGCGCGATCCACCGTGCCGCCGGCCCGGAGCTTCTGGAAGAATGCCGCA
AGCTCGGCGGCTGCGAGACGGGCGACGCCAGGATAACCAAGGCCTATCGCCTTCCCGCCCGCCACGTCATTCACACGGTC
GGCCCCGTCTGGCATGGCGGCCATGAAGGCGAAGCGGACCTCCTCGCCTCCTGCTACCGCCGCTCACTGGAGCTGGCGCG
AGACCACGGCTGCAAATCCGTCGCCTTCCCGGCAATTTCAACAGGCGTCTACGGCTACCCGAAGGACCAAGCCGCCCGCA
TCGCGGTGCAAACGGTGGCGGAGTTTTTGGAAGGGAATGAGATGCCGGAGAGGGTGGTGTTTGTCGGGTTCGATGAGGAG
ACGACGCGGGGGTATTCTTGGATGGTTGCGGCGTACAGACGCTGA

Upstream 100 bases:

>100_bases
CTCCCTGGCGGCAAGAAAGCGATTTCAACATCTTGGCTGGAGCGAAGCGGAGGCTAATTGTAAAAAACGGAAGCGGGTAA
CTGCCCGGAGGAAAAACGCC

Downstream 100 bases:

>100_bases
CAGGTTCCGAGCGTTTTCTAAGCCGCATACTATCTGGGCAATTCGGCAATTTGGTCGTCTGATTACGCGGGGATTAAGTG
ATGGATAGAGTAACTAGGGC

Product: Appr-1-p processing

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MPVTGRMTAITGDITKIEADAIVNAANRSLLGGGGVDGAIHRAAGPELLEECRKLGGCETGDARITKAYRLPARHVIHTV
GPVWHGGHEGEADLLASCYRRSLELARDHGCKSVAFPAISTGVYGYPKDQAARIAVQTVAEFLEGNEMPERVVFVGFDEE
TTRGYSWMVAAYRR

Sequences:

>Translated_174_residues
MPVTGRMTAITGDITKIEADAIVNAANRSLLGGGGVDGAIHRAAGPELLEECRKLGGCETGDARITKAYRLPARHVIHTV
GPVWHGGHEGEADLLASCYRRSLELARDHGCKSVAFPAISTGVYGYPKDQAARIAVQTVAEFLEGNEMPERVVFVGFDEE
TTRGYSWMVAAYRR
>Mature_173_residues
PVTGRMTAITGDITKIEADAIVNAANRSLLGGGGVDGAIHRAAGPELLEECRKLGGCETGDARITKAYRLPARHVIHTVG
PVWHGGHEGEADLLASCYRRSLELARDHGCKSVAFPAISTGVYGYPKDQAARIAVQTVAEFLEGNEMPERVVFVGFDEET
TRGYSWMVAAYRR

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=157, Percent_Identity=55.4140127388535, Blast_Score=173, Evalue=6e-44,
Organism=Homo sapiens, GI13569840, Length=157, Percent_Identity=54.7770700636943, Blast_Score=167, Evalue=6e-42,
Organism=Homo sapiens, GI207450721, Length=160, Percent_Identity=41.875, Blast_Score=121, Evalue=3e-28,
Organism=Homo sapiens, GI8923143, Length=160, Percent_Identity=41.875, Blast_Score=121, Evalue=3e-28,
Organism=Homo sapiens, GI154813199, Length=164, Percent_Identity=35.3658536585366, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI20336746, Length=162, Percent_Identity=32.7160493827161, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI226371718, Length=143, Percent_Identity=34.2657342657343, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371716, Length=143, Percent_Identity=34.2657342657343, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371714, Length=143, Percent_Identity=34.2657342657343, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371712, Length=143, Percent_Identity=34.2657342657343, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371710, Length=143, Percent_Identity=34.2657342657343, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371706, Length=143, Percent_Identity=34.2657342657343, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI93141018, Length=174, Percent_Identity=29.8850574712644, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI93141020, Length=165, Percent_Identity=30.3030303030303, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI4758496, Length=165, Percent_Identity=30.3030303030303, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI165377137, Length=137, Percent_Identity=32.1167883211679, Blast_Score=70, Evalue=8e-13,
Organism=Escherichia coli, GI1787283, Length=168, Percent_Identity=56.547619047619, Blast_Score=184, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI17538214, Length=173, Percent_Identity=49.1329479768786, Blast_Score=157, Evalue=2e-39,
Organism=Drosophila melanogaster, GI24586353, Length=162, Percent_Identity=33.9506172839506, Blast_Score=94, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18756; Mature: 18625

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVTGRMTAITGDITKIEADAIVNAANRSLLGGGGVDGAIHRAAGPELLEECRKLGGCET
CCCCCCEEEEECCCCEEHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCC
GDARITKAYRLPARHVIHTVGPVWHGGHEGEADLLASCYRRSLELARDHGCKSVAFPAIS
CCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
TGVYGYPKDQAARIAVQTVAEFLEGNEMPERVVFVGFDEETTRGYSWMVAAYRR
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
PVTGRMTAITGDITKIEADAIVNAANRSLLGGGGVDGAIHRAAGPELLEECRKLGGCET
CCCCCEEEEECCCCEEHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCC
GDARITKAYRLPARHVIHTVGPVWHGGHEGEADLLASCYRRSLELARDHGCKSVAFPAIS
CCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
TGVYGYPKDQAARIAVQTVAEFLEGNEMPERVVFVGFDEETTRGYSWMVAAYRR
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]