Click here to switch to the map view.

The map label for this gene is yagI [H]

Identifier: 110633175

GI number: 110633175

Start: 906198

End: 907028

Strand: Reverse

Name: yagI [H]

Synonym: Meso_0818

Alternate gene names: 110633175

Gene position: 907028-906198 (Counterclockwise)

Preceding gene: 110633183

Following gene: 110633174

Centisome position: 20.56

GC content: 63.06

Gene sequence:

>831_bases
ATGGCTGGAGTTGCCCGCGTGGACGACGATACGATCGAGATCGATGATGAAACCTCCCAGGGCCCGTCCTATTCGGTGCC
CCCGGTCCACCGCGCCTTCCGGCTTCTCAGGCATATCGCGGCGGGTGGACGCTGCCGCAACGCAGCGGCCACGGCGCGCG
AATTGGGCATCAACAGGACGACGCTGATCCGCCTTCTTCATACGCTGGAAGCGGAAGGAATAATCGAATCGGATGATGAT
GGCGCGAGCTGGCAGCTTGGGGTTGGGATGATCTCCCTGGCCGCCGACGCGCTCAAGTCGCGCGATGTGACGAGGGTCGC
CCAACCCATCATGGCAAGGCTTGTCAACGAACTGCACCTGTCGATCCATCTGGGCGTGCTCGACGGGCGCGACGTGGTCT
ATCTGCTGCGCGAAACGCCCAATTCGCACCTGATCAGCAATATTCGCGAGGGTTCGCGCCTGCCCGCCCACGCCACGACG
ATCGGGCGCATCCTGCTTGCCTATATGCCGGAAAGACAGTTGCTGGATCTCTACAGGGACGCCGACCTGGAAGCCCACAC
TCCCAAAACCTCGACGACCCTGACCCAGCTCATCGCTCAGATTGCCGAGGACCGCAAGCAGGGCATTGCCTGGAGCAAGG
GCAATTTCGAGCCGGGAATCGGCTCCTGCGCAGCGGCCATTTTCGACCATCGATCCCGTCCCATCGCGGGCATCAACGTC
ACCGGCCCCGAAGAGCAATTCAGCGCCTATAGCAACAACGCCCAGCGCATCGAGGGCGCCATCAAGGCGGCCGCGGCCGA
GATTTCCAAGGGCCTCGGCTACCGGGGCTGA

Upstream 100 bases:

>100_bases
AATATAAACTCAATGTTCATAATTATGCATAAGCACCCTCGTGTCAAGGGCCGCACATTGCCCGCACTGGCGCTATGGAC
TAAGGGAAAGTACGAGACTT

Downstream 100 bases:

>100_bases
GCCATAAAGGCCCCGCGCGCAACCAACGCAGCAACAATATCTCCCGACACCCCCGGCGGTGGTGCCGACAGCTCTGGCGT
GCGGACAAAAGCAACGCGCA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MAGVARVDDDTIEIDDETSQGPSYSVPPVHRAFRLLRHIAAGGRCRNAAATARELGINRTTLIRLLHTLEAEGIIESDDD
GASWQLGVGMISLAADALKSRDVTRVAQPIMARLVNELHLSIHLGVLDGRDVVYLLRETPNSHLISNIREGSRLPAHATT
IGRILLAYMPERQLLDLYRDADLEAHTPKTSTTLTQLIAQIAEDRKQGIAWSKGNFEPGIGSCAAAIFDHRSRPIAGINV
TGPEEQFSAYSNNAQRIEGAIKAAAAEISKGLGYRG

Sequences:

>Translated_276_residues
MAGVARVDDDTIEIDDETSQGPSYSVPPVHRAFRLLRHIAAGGRCRNAAATARELGINRTTLIRLLHTLEAEGIIESDDD
GASWQLGVGMISLAADALKSRDVTRVAQPIMARLVNELHLSIHLGVLDGRDVVYLLRETPNSHLISNIREGSRLPAHATT
IGRILLAYMPERQLLDLYRDADLEAHTPKTSTTLTQLIAQIAEDRKQGIAWSKGNFEPGIGSCAAAIFDHRSRPIAGINV
TGPEEQFSAYSNNAQRIEGAIKAAAAEISKGLGYRG
>Mature_275_residues
AGVARVDDDTIEIDDETSQGPSYSVPPVHRAFRLLRHIAAGGRCRNAAATARELGINRTTLIRLLHTLEAEGIIESDDDG
ASWQLGVGMISLAADALKSRDVTRVAQPIMARLVNELHLSIHLGVLDGRDVVYLLRETPNSHLISNIREGSRLPAHATTI
GRILLAYMPERQLLDLYRDADLEAHTPKTSTTLTQLIAQIAEDRKQGIAWSKGNFEPGIGSCAAAIFDHRSRPIAGINVT
GPEEQFSAYSNNAQRIEGAIKAAAAEISKGLGYRG

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=251, Percent_Identity=26.6932270916335, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI87082359, Length=220, Percent_Identity=27.2727272727273, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786715, Length=247, Percent_Identity=25.1012145748988, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788131, Length=252, Percent_Identity=26.984126984127, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788581, Length=253, Percent_Identity=28.4584980237154, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790752, Length=250, Percent_Identity=26.8, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29900; Mature: 29769

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGVARVDDDTIEIDDETSQGPSYSVPPVHRAFRLLRHIAAGGRCRNAAATARELGINRT
CCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHH
TLIRLLHTLEAEGIIESDDDGASWQLGVGMISLAADALKSRDVTRVAQPIMARLVNELHL
HHHHHHHHHHHCCCEECCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEE
SIHLGVLDGRDVVYLLRETPNSHLISNIREGSRLPAHATTIGRILLAYMPERQLLDLYRD
EEEEEEECCCCEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHC
ADLEAHTPKTSTTLTQLIAQIAEDRKQGIAWSKGNFEPGIGSCAAAIFDHRSRPIAGINV
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC
TGPEEQFSAYSNNAQRIEGAIKAAAAEISKGLGYRG
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AGVARVDDDTIEIDDETSQGPSYSVPPVHRAFRLLRHIAAGGRCRNAAATARELGINRT
CCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHH
TLIRLLHTLEAEGIIESDDDGASWQLGVGMISLAADALKSRDVTRVAQPIMARLVNELHL
HHHHHHHHHHHCCCEECCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEE
SIHLGVLDGRDVVYLLRETPNSHLISNIREGSRLPAHATTIGRILLAYMPERQLLDLYRD
EEEEEEECCCCEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHC
ADLEAHTPKTSTTLTQLIAQIAEDRKQGIAWSKGNFEPGIGSCAAAIFDHRSRPIAGINV
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC
TGPEEQFSAYSNNAQRIEGAIKAAAAEISKGLGYRG
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]