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The map label for this gene is hpcR [H]

Identifier: 110633167

GI number: 110633167

Start: 898618

End: 899172

Strand: Direct

Name: hpcR [H]

Synonym: Meso_0810

Alternate gene names: 110633167

Gene position: 898618-899172 (Clockwise)

Preceding gene: 110633166

Following gene: 110633168

Centisome position: 20.37

GC content: 62.52

Gene sequence:

>555_bases
ATGTCATCACCGGCCGACGAGAGCGCCTCAAGGAGCCGGGTAAAGCTGCGCGGGTTCAAACGCTCGCTGCCGATGGCGCT
GCTGCGCGCTCGGGAGGCCGTCATGCGGCAGTTCCGTCCCTCTCTGCGCCAGCACGGCATCACCGAGCAGCAATGGCGTA
TTCTGCGCGCGCTTTCCGCGACCGACAAAATGGAAGTACTGGAGCTCGCCTCTGTAACCTTTCTGCTCGCGCCATCGGTA
TCGCGCATCCTGAAGGACCTCGAGGAAAGAGGTCTCGTCGTTCGGAGATCCTCAGCCGCCGATCTCCGGCGCGGCCTCAT
CTCGCTGTCGCCGCGGGGACAGCAGTTGATAGACAAGGCCGGTGAACGCTCCGAAATCATCTATGCCGAGATCACCCGCC
GGTTCGGTCAGGAGCGTCTGCAGATGCTATATACCTTGCTGAGCGAGCTCGAGGCCGAACTGGCGGAGCTTGAGGAGCTA
CCGGATCTTGGACTCAAGGATCTACCCATTGCCGATACGGGGCAACGGCGGCGCGGTCGGCCGAAGGGAAGCTAA

Upstream 100 bases:

>100_bases
AGAATGGTGGGACGATCGTCCCGCAACGAGACTTCGGTTGTCTTGACGTCCAGTGATGGTAACAGTTCCATTACGAAGAG
GGACAGGAGACAATCAGAAC

Downstream 100 bases:

>100_bases
CGTGTGAAACGCCGTCCTTGAAAGGCTCGATATCGCCAATCGGATCTTGGTTGAGGCACTAGCTGTCTCTTGACGCGCGA
AAAGAACTTAATATGTTATG

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MSSPADESASRSRVKLRGFKRSLPMALLRAREAVMRQFRPSLRQHGITEQQWRILRALSATDKMEVLELASVTFLLAPSV
SRILKDLEERGLVVRRSSAADLRRGLISLSPRGQQLIDKAGERSEIIYAEITRRFGQERLQMLYTLLSELEAELAELEEL
PDLGLKDLPIADTGQRRRGRPKGS

Sequences:

>Translated_184_residues
MSSPADESASRSRVKLRGFKRSLPMALLRAREAVMRQFRPSLRQHGITEQQWRILRALSATDKMEVLELASVTFLLAPSV
SRILKDLEERGLVVRRSSAADLRRGLISLSPRGQQLIDKAGERSEIIYAEITRRFGQERLQMLYTLLSELEAELAELEEL
PDLGLKDLPIADTGQRRRGRPKGS
>Mature_183_residues
SSPADESASRSRVKLRGFKRSLPMALLRAREAVMRQFRPSLRQHGITEQQWRILRALSATDKMEVLELASVTFLLAPSVS
RILKDLEERGLVVRRSSAADLRRGLISLSPRGQQLIDKAGERSEIIYAEITRRFGQERLQMLYTLLSELEAELAELEELP
DLGLKDLPIADTGQRRRGRPKGS

Specific function: Repressor for the homoprotocatechuate catabolic pathway hpc operon [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012712
- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 20850; Mature: 20718

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPADESASRSRVKLRGFKRSLPMALLRAREAVMRQFRPSLRQHGITEQQWRILRALSA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
TDKMEVLELASVTFLLAPSVSRILKDLEERGLVVRRSSAADLRRGLISLSPRGQQLIDKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHCCCCCHHHHHHCC
GERSEIIYAEITRRFGQERLQMLYTLLSELEAELAELEELPDLGLKDLPIADTGQRRRGR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCC
PKGS
CCCC
>Mature Secondary Structure 
SSPADESASRSRVKLRGFKRSLPMALLRAREAVMRQFRPSLRQHGITEQQWRILRALSA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
TDKMEVLELASVTFLLAPSVSRILKDLEERGLVVRRSSAADLRRGLISLSPRGQQLIDKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHCCCCCHHHHHHCC
GERSEIIYAEITRRFGQERLQMLYTLLSELEAELAELEELPDLGLKDLPIADTGQRRRGR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCC
PKGS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8384293; 8550403 [H]