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The map label for this gene is ydfH [C]

Identifier: 110633147

GI number: 110633147

Start: 868509

End: 869198

Strand: Direct

Name: ydfH [C]

Synonym: Meso_0790

Alternate gene names: 110633147

Gene position: 868509-869198 (Clockwise)

Preceding gene: 110633138

Following gene: 110633148

Centisome position: 19.68

GC content: 60.43

Gene sequence:

>690_bases
ATGGCCGCGCGTGGCAGGGGGCAATTGAAAGGCATGACGATCGATCGGCCGAAGTCGCTGGCGGCGATCGTGGCCAATCG
GCTGAAAGACGCGATCTGCAAGGCGGAGATCGGTTTGGGCGAGGTGCTGTCGGAAGAAAAGATCGCCTCGGCGATGAAGG
TCAGCCGGACCCCCGTGCGTGAGGCGTTCACGCTGCTTCAGGCCCAGGGACTGATCAACATCTATCCGCAGCGTGGAACT
GCTGTCTTCAAGCCCGATGCGGAGGATGTCCGTGCGCTCGTCCAATACCGGATGATGATCGAAACGCAGGCAGCGCGGAT
GACCATGGCGCATGATCCGATCCATGCCCAGGCCAAGCTCACCAAGGCAGTGTCCATGATGACCATCGCGCGTGAGACCG
AGGACCCGCTGCTCTATGCGGAGGCGGACAACCTCTTCCACAGCGCCTTCATCGATCACTGCGGCAACCACTATGTGCGC
GAGGGATACGAAACCTGCGCCAGCCGGATCGCCGCCCTCAGGGCGCACCTGTCGAGCCCGCTGGAAATGTACCGCAACCA
GACCTTCAACGAACATGTCGAAATGCTGGATGCCTTTGGCAAGGGCGATGCCGATACGCTGATCGCGATCCTGCGCGAGC
ATGTCGCCAACATGGAAGGCAACTATATCAAGGCGCTATCGATCCTTTAG

Upstream 100 bases:

>100_bases
TTCCTCAAAAAAATTTGTTGAGGAAGTGAGAAAAACATATTGTACCTCAGTTGTGGCCGTCACTAGAATATGACGACCGC
AGACAGGGAAAGGGCGTTTT

Downstream 100 bases:

>100_bases
TGGTCGGATCTGGAATTGCCAAAGTCAGAACGGCAAGGCGTCCAGCAAGGCGCGCCGGGTGACGGCGATTACCTTGCGCC
GATCGGAGGATTCGGAAAAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator GntR Family Protein; GntR Domain-Containing Protein; Sporulation Transcription Factor WhiH; Transcriptional Regulator Gntr Family; Transcriptional Regulator Protein; GntR Family Regulatory Protein; Sporulation Transcription Factor; HTH-Type Transcriptional Regulator; Mn-Dependent Transcriptional Regulator; Transcriptional Regulator GntR; GntR Family Regulatory; Regulatory Protein; GntR Family Transcription Regulator; Transcription Regulator Protein; FCD Domain Protein; Transcriptional Regulator GntR-Type; Regulatory Protein GntR HTHGntR; GntR Transcriptional Regulator GntR; GntR Family Transcription Regulator Protein; Regulatory Protein GntR HTH

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MAARGRGQLKGMTIDRPKSLAAIVANRLKDAICKAEIGLGEVLSEEKIASAMKVSRTPVREAFTLLQAQGLINIYPQRGT
AVFKPDAEDVRALVQYRMMIETQAARMTMAHDPIHAQAKLTKAVSMMTIARETEDPLLYAEADNLFHSAFIDHCGNHYVR
EGYETCASRIAALRAHLSSPLEMYRNQTFNEHVEMLDAFGKGDADTLIAILREHVANMEGNYIKALSIL

Sequences:

>Translated_229_residues
MAARGRGQLKGMTIDRPKSLAAIVANRLKDAICKAEIGLGEVLSEEKIASAMKVSRTPVREAFTLLQAQGLINIYPQRGT
AVFKPDAEDVRALVQYRMMIETQAARMTMAHDPIHAQAKLTKAVSMMTIARETEDPLLYAEADNLFHSAFIDHCGNHYVR
EGYETCASRIAALRAHLSSPLEMYRNQTFNEHVEMLDAFGKGDADTLIAILREHVANMEGNYIKALSIL
>Mature_228_residues
AARGRGQLKGMTIDRPKSLAAIVANRLKDAICKAEIGLGEVLSEEKIASAMKVSRTPVREAFTLLQAQGLINIYPQRGTA
VFKPDAEDVRALVQYRMMIETQAARMTMAHDPIHAQAKLTKAVSMMTIARETEDPLLYAEADNLFHSAFIDHCGNHYVRE
GYETCASRIAALRAHLSSPLEMYRNQTFNEHVEMLDAFGKGDADTLIAILREHVANMEGNYIKALSIL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=195, Percent_Identity=27.6923076923077, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25404; Mature: 25273

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAARGRGQLKGMTIDRPKSLAAIVANRLKDAICKAEIGLGEVLSEEKIASAMKVSRTPVR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHH
EAFTLLQAQGLINIYPQRGTAVFKPDAEDVRALVQYRMMIETQAARMTMAHDPIHAQAKL
HHHHHHHHCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TKAVSMMTIARETEDPLLYAEADNLFHSAFIDHCGNHYVREGYETCASRIAALRAHLSSP
HHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCH
LEMYRNQTFNEHVEMLDAFGKGDADTLIAILREHVANMEGNYIKALSIL
HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEHEECC
>Mature Secondary Structure 
AARGRGQLKGMTIDRPKSLAAIVANRLKDAICKAEIGLGEVLSEEKIASAMKVSRTPVR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHH
EAFTLLQAQGLINIYPQRGTAVFKPDAEDVRALVQYRMMIETQAARMTMAHDPIHAQAKL
HHHHHHHHCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TKAVSMMTIARETEDPLLYAEADNLFHSAFIDHCGNHYVREGYETCASRIAALRAHLSSP
HHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCH
LEMYRNQTFNEHVEMLDAFGKGDADTLIAILREHVANMEGNYIKALSIL
HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA