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The map label for this gene is hofQ [C]

Identifier: 110632971

GI number: 110632971

Start: 687379

End: 688773

Strand: Reverse

Name: hofQ [C]

Synonym: Meso_0614

Alternate gene names: 110632971

Gene position: 688773-687379 (Counterclockwise)

Preceding gene: 110632972

Following gene: 110632970

Centisome position: 15.61

GC content: 60.65

Gene sequence:

>1395_bases
ATGAAAGCGGCCACAGCCACCGGAAACAAGCGGCTGACCCGATATGTTTTCGCCGTGTGCGCACTGGCCTTTTTTGGTTG
CGCATTCGGCACAATGGATTCATCCGCCAACGGGGATTCCATTCAGGTATCGGTTGCAAAGGACTCGGCGATCCGAGTGG
CAAGGGGAAAGCCACTTACGGTCGAGATCGCTGAAGCATTCGACGAAATAGTGATCGGCGATCCCGAAATCGCAACAATC
AATCCCCTCACCGATCATTCCTTCTACGTGCTCGGCCAGGGCCTCGGCACCACCGGAATAGCGCTCTACGACGAAAGCAA
GCGCCTCATCGGCACTTTCGACGTGGAAGTGACGCTCGATACGAAGATGCTCGCCGGCACGATCCGCCAGAGCGTACCCG
GATCAAACATAAAGGTGACCTCCGCCAACGGCAGGATCGTTCTTTCAGGCTCCGCGCCCGACGCGGTTGCCGCTGAAAAG
GCCAGCCAGATTGCGGCGCGATTTGCGGGCGACGAGGACGTCATCAACACCATCGATATTACCTCTTCCCAACAGGTTCA
GCTCAATGTCCGTTTTGTCGAGATCAATCGGGCGGTGGGCAAGGAGCTGGGAACGAAGATCAGCGCGGCCTATGTCACCT
CCGGAGGTGGCATTTCCTTCAACAGCGATCCGCGAGCTTCCAGCAACACGCCGGCCGGCGACCTCATCGGGGGCTTGGTG
AGCGACGGCTTTTCCATAGATGTCGCGATCGAGGCTCTGGAGGACCGCGGCGTCGCCCGCCGGCTCGCCGAACCGAATCT
CATCGCCCGCTCCGGCGAGACGGCAAGCTTTTTGGCTGGCGGAGAATTCCCGATTCCGGTTTCGGAGGAGAACGGCGCGG
TAACCGTCTCCTACAAGAAATTCGGGGTGGGCCTCAATTTCACTCCGACCGTGCTGAGCGATGGATTGATCGCCCTCGAC
ATTGAACCGGAGGTCTCCTCCATCGACACCACCTCCTCCTATCGCGTGGGCAATATCGCCATTCCTGGGTTCACCGTCCG
GCGGGCGCGCACCTCGATCGATCTTAGAAGCGGGCAGAGCTTCATGATGGCAGGGCTTCTGCAGAGCCAGAACGAGATCA
ACACCCAGCGCGTGCCGGGCCTCGGCCAGCTCCCCGTATTGGGCGCGCTGTTCTCGTCGAAGGCATATCAGCGCCGGGAG
ACCGATCTTGTGATCATAGTCACGCCTCACCTCGTCAGCCCCATCCCGCCGGGAAACAAGGTCGCCACTCCAGCGGACCG
GACCAAGCCTGCGCGCGACGGTGAAGTCTTCCTGGGCAATGTGGAGGAGGTGCGGCTTCAGCAGCGCACGGCTGCAAACG
CCCCTTCGGCGGGCCACTTCCTGGAGCTGCGCTAA

Upstream 100 bases:

>100_bases
AATGTGTTGACCGCATCACGGGCTTCCCCCATCACTGCTTATCAAAATATCACTTCGGGGTTGCCAGGGCGGAGGATCGT
GATCAGCAAGGGGGGTTGAC

Downstream 100 bases:

>100_bases
TGCGTAAGCGGTTGGCCATCCCCGCAGCACTTGCGACGGCCGTGCTTCTTCTGGCCGGCTGCGCCACCGAGCCGCCGTTG
CGCTCCGAGACCATAGATTT

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MKAATATGNKRLTRYVFAVCALAFFGCAFGTMDSSANGDSIQVSVAKDSAIRVARGKPLTVEIAEAFDEIVIGDPEIATI
NPLTDHSFYVLGQGLGTTGIALYDESKRLIGTFDVEVTLDTKMLAGTIRQSVPGSNIKVTSANGRIVLSGSAPDAVAAEK
ASQIAARFAGDEDVINTIDITSSQQVQLNVRFVEINRAVGKELGTKISAAYVTSGGGISFNSDPRASSNTPAGDLIGGLV
SDGFSIDVAIEALEDRGVARRLAEPNLIARSGETASFLAGGEFPIPVSEENGAVTVSYKKFGVGLNFTPTVLSDGLIALD
IEPEVSSIDTTSSYRVGNIAIPGFTVRRARTSIDLRSGQSFMMAGLLQSQNEINTQRVPGLGQLPVLGALFSSKAYQRRE
TDLVIIVTPHLVSPIPPGNKVATPADRTKPARDGEVFLGNVEEVRLQQRTAANAPSAGHFLELR

Sequences:

>Translated_464_residues
MKAATATGNKRLTRYVFAVCALAFFGCAFGTMDSSANGDSIQVSVAKDSAIRVARGKPLTVEIAEAFDEIVIGDPEIATI
NPLTDHSFYVLGQGLGTTGIALYDESKRLIGTFDVEVTLDTKMLAGTIRQSVPGSNIKVTSANGRIVLSGSAPDAVAAEK
ASQIAARFAGDEDVINTIDITSSQQVQLNVRFVEINRAVGKELGTKISAAYVTSGGGISFNSDPRASSNTPAGDLIGGLV
SDGFSIDVAIEALEDRGVARRLAEPNLIARSGETASFLAGGEFPIPVSEENGAVTVSYKKFGVGLNFTPTVLSDGLIALD
IEPEVSSIDTTSSYRVGNIAIPGFTVRRARTSIDLRSGQSFMMAGLLQSQNEINTQRVPGLGQLPVLGALFSSKAYQRRE
TDLVIIVTPHLVSPIPPGNKVATPADRTKPARDGEVFLGNVEEVRLQQRTAANAPSAGHFLELR
>Mature_464_residues
MKAATATGNKRLTRYVFAVCALAFFGCAFGTMDSSANGDSIQVSVAKDSAIRVARGKPLTVEIAEAFDEIVIGDPEIATI
NPLTDHSFYVLGQGLGTTGIALYDESKRLIGTFDVEVTLDTKMLAGTIRQSVPGSNIKVTSANGRIVLSGSAPDAVAAEK
ASQIAARFAGDEDVINTIDITSSQQVQLNVRFVEINRAVGKELGTKISAAYVTSGGGISFNSDPRASSNTPAGDLIGGLV
SDGFSIDVAIEALEDRGVARRLAEPNLIARSGETASFLAGGEFPIPVSEENGAVTVSYKKFGVGLNFTPTVLSDGLIALD
IEPEVSSIDTTSSYRVGNIAIPGFTVRRARTSIDLRSGQSFMMAGLLQSQNEINTQRVPGLGQLPVLGALFSSKAYQRRE
TDLVIIVTPHLVSPIPPGNKVATPADRTKPARDGEVFLGNVEEVRLQQRTAANAPSAGHFLELR

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=235, Percent_Identity=30.2127659574468, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082242, Length=236, Percent_Identity=26.6949152542373, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 48847; Mature: 48847

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAATATGNKRLTRYVFAVCALAFFGCAFGTMDSSANGDSIQVSVAKDSAIRVARGKPLT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEECCCCEE
VEIAEAFDEIVIGDPEIATINPLTDHSFYVLGQGLGTTGIALYDESKRLIGTFDVEVTLD
EEHHHHHHHEEECCCCEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEEEEEEEEC
TKMLAGTIRQSVPGSNIKVTSANGRIVLSGSAPDAVAAEKASQIAARFAGDEDVINTIDI
HHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
TSSQQVQLNVRFVEINRAVGKELGTKISAAYVTSGGGISFNSDPRASSNTPAGDLIGGLV
CCCCEEEEEEEEEEECHHHHHHHCCEEEEEEEECCCCEEECCCCCCCCCCCHHHHHHHHH
SDGFSIDVAIEALEDRGVARRLAEPNLIARSGETASFLAGGEFPIPVSEENGAVTVSYKK
CCCEEEEEEEEEHHCCCHHHHHCCCCEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEHH
FGVGLNFTPTVLSDGLIALDIEPEVSSIDTTSSYRVGNIAIPGFTVRRARTSIDLRSGQS
CCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCEEECEEECCCEEEEHHHCEEEECCCCH
FMMAGLLQSQNEINTQRVPGLGQLPVLGALFSSKAYQRRETDLVIIVTPHLVSPIPPGNK
HHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCC
VATPADRTKPARDGEVFLGNVEEVRLQQRTAANAPSAGHFLELR
CCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCEEEEC
>Mature Secondary Structure
MKAATATGNKRLTRYVFAVCALAFFGCAFGTMDSSANGDSIQVSVAKDSAIRVARGKPLT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEECCCCEE
VEIAEAFDEIVIGDPEIATINPLTDHSFYVLGQGLGTTGIALYDESKRLIGTFDVEVTLD
EEHHHHHHHEEECCCCEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEEEEEEEEC
TKMLAGTIRQSVPGSNIKVTSANGRIVLSGSAPDAVAAEKASQIAARFAGDEDVINTIDI
HHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
TSSQQVQLNVRFVEINRAVGKELGTKISAAYVTSGGGISFNSDPRASSNTPAGDLIGGLV
CCCCEEEEEEEEEEECHHHHHHHCCEEEEEEEECCCCEEECCCCCCCCCCCHHHHHHHHH
SDGFSIDVAIEALEDRGVARRLAEPNLIARSGETASFLAGGEFPIPVSEENGAVTVSYKK
CCCEEEEEEEEEHHCCCHHHHHCCCCEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEHH
FGVGLNFTPTVLSDGLIALDIEPEVSSIDTTSSYRVGNIAIPGFTVRRARTSIDLRSGQS
CCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCEEECEEECCCEEEEHHHCEEEECCCCH
FMMAGLLQSQNEINTQRVPGLGQLPVLGALFSSKAYQRRETDLVIIVTPHLVSPIPPGNK
HHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCC
VATPADRTKPARDGEVFLGNVEEVRLQQRTAANAPSAGHFLELR
CCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]