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The map label for this gene is rcnA [H]

Identifier: 110632918

GI number: 110632918

Start: 616610

End: 617806

Strand: Reverse

Name: rcnA [H]

Synonym: Meso_0559

Alternate gene names: 110632918

Gene position: 617806-616610 (Counterclockwise)

Preceding gene: 110632919

Following gene: 110632917

Centisome position: 14.0

GC content: 56.73

Gene sequence:

>1197_bases
ATGGAATCTTTCAGTTCACTTCTTGCCCAGGGAGGCAGTTCGGCTTGGCTATTCATTCCTAGTGCGATCCTGTTGGGCGC
GCTGCATGGTCTGGAGCCCGGTCATTCAAAGACGATGATGGCAGCGTTCATTGTAGCGGTCAGGGGAACCGTCGTGCAGG
CTGTCTTGCTCGGACTGGCCGCTACGGTGTCTCACACGCTGGTGGTTTGGGGTATCGCGTTAGGCGGCATGTATCTCTTC
TCAAATCTGGACGCTGAGGTCGCCGAGCCTTACTTCCAGTTGGTTTCAGCAATCATAATCATAGGTGTCGCCGCCTGGAT
GTTCCGCCAGACCTGGAGGGAGCGGGTAGCTGCAAAGCAGTATGAGCGCGACGTCGCGCGGTGGGAGAAGACACGCGACA
AATCCGTGATCACGCAAAAAGTTGATACCGGACACGGGTTCATGTCCATGGAGATCACTCCGCAGAAGCCAGCGTTCTGG
CGCCTGAAGGTCGTGAGTGGTGATAAGTGGCTTGCCGATGACGTGATCGTTACCACCGAGCGGCCAGACGGATCGAAGCA
GAAGTTCACCTTCGTCGACCGTGACGGTTACATGGAATCGATCGAAACGATTGCGGAGCCATATAATTTCACCGCGCGCC
TGAGCCTGGATCATGGCGACCATGAGCATGATTACGATCTGGCATTCCAGCAGGAATCGACCGCTGTTTCCAAGGATGAT
TCCGGATTGAACCTGCAGACGGAGGGGTACCAGGACGCTCATGCCCTCTCGCACGCCAATGATATCCGCAAGCGTTTCGC
AAACCGGCAGGTTACGACCTGGCAGATCATCCTGTTCGGTCTTACCGGCGGTCTCATTCCCTGTCCCGCTGCGATCACCG
TTCTCCTGCTGTGTCTCCAGCTTGAGAAGCTATCGCTCGGCGCGGTTCTTGTTCTCTGCTTCTCAATCGGATTGGCAATC
ACATTGGTCGTGGTCGGAGCAGTGGCTGCGGTCGGCGTCAGGAAGGCGACCCAGAAGTTCAGCTGGCTTTCGACGGCGGC
CGCGAGAGCACCATATTTTTCCAGCGCACTGATCGTGCTGGTCGGGCTCTACATGGGCTATCACGGCATCGAAGGAATTA
TGAACCCGCACCATGAGGAGGAGGCGGCCTTGAGCAGGACGAATCCCGTTGTCGAACGGGTGCAGTCTTCAATGTGA

Upstream 100 bases:

>100_bases
TTTGAATTCTCGCGGACGAGGGGATCCGTCTGCTGGCGCCGTTCAAAAATTTCAGTGTGCCGCTGTCTATGTGGCGTTCT
GAGCAGATTGGAGAGAGGAT

Downstream 100 bases:

>100_bases
TCTCCTCCAGCCTGGAAAGCGCGGTCATGGGGATTTCGCCATTGTAAGGAATTTCGTATGAGAACAGTGTTTGGTGAACT
GACCAAAAACCGAAAACTGG

Product: high-affinity nickel-transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MESFSSLLAQGGSSAWLFIPSAILLGALHGLEPGHSKTMMAAFIVAVRGTVVQAVLLGLAATVSHTLVVWGIALGGMYLF
SNLDAEVAEPYFQLVSAIIIIGVAAWMFRQTWRERVAAKQYERDVARWEKTRDKSVITQKVDTGHGFMSMEITPQKPAFW
RLKVVSGDKWLADDVIVTTERPDGSKQKFTFVDRDGYMESIETIAEPYNFTARLSLDHGDHEHDYDLAFQQESTAVSKDD
SGLNLQTEGYQDAHALSHANDIRKRFANRQVTTWQIILFGLTGGLIPCPAAITVLLLCLQLEKLSLGAVLVLCFSIGLAI
TLVVVGAVAAVGVRKATQKFSWLSTAAARAPYFSSALIVLVGLYMGYHGIEGIMNPHHEEEAALSRTNPVVERVQSSM

Sequences:

>Translated_398_residues
MESFSSLLAQGGSSAWLFIPSAILLGALHGLEPGHSKTMMAAFIVAVRGTVVQAVLLGLAATVSHTLVVWGIALGGMYLF
SNLDAEVAEPYFQLVSAIIIIGVAAWMFRQTWRERVAAKQYERDVARWEKTRDKSVITQKVDTGHGFMSMEITPQKPAFW
RLKVVSGDKWLADDVIVTTERPDGSKQKFTFVDRDGYMESIETIAEPYNFTARLSLDHGDHEHDYDLAFQQESTAVSKDD
SGLNLQTEGYQDAHALSHANDIRKRFANRQVTTWQIILFGLTGGLIPCPAAITVLLLCLQLEKLSLGAVLVLCFSIGLAI
TLVVVGAVAAVGVRKATQKFSWLSTAAARAPYFSSALIVLVGLYMGYHGIEGIMNPHHEEEAALSRTNPVVERVQSSM
>Mature_398_residues
MESFSSLLAQGGSSAWLFIPSAILLGALHGLEPGHSKTMMAAFIVAVRGTVVQAVLLGLAATVSHTLVVWGIALGGMYLF
SNLDAEVAEPYFQLVSAIIIIGVAAWMFRQTWRERVAAKQYERDVARWEKTRDKSVITQKVDTGHGFMSMEITPQKPAFW
RLKVVSGDKWLADDVIVTTERPDGSKQKFTFVDRDGYMESIETIAEPYNFTARLSLDHGDHEHDYDLAFQQESTAVSKDD
SGLNLQTEGYQDAHALSHANDIRKRFANRQVTTWQIILFGLTGGLIPCPAAITVLLLCLQLEKLSLGAVLVLCFSIGLAI
TLVVVGAVAAVGVRKATQKFSWLSTAAARAPYFSSALIVLVGLYMGYHGIEGIMNPHHEEEAALSRTNPVVERVQSSM

Specific function: Efflux system for nickel and cobalt [H]

COG id: COG2215

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NiCoT transporter (TC 2.A.52) family. RcnA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788423, Length=125, Percent_Identity=66.4, Blast_Score=172, Evalue=3e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011541 [H]

Pfam domain/function: PF03824 NicO [H]

EC number: NA

Molecular weight: Translated: 43601; Mature: 43601

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESFSSLLAQGGSSAWLFIPSAILLGALHGLEPGHSKTMMAAFIVAVRGTVVQAVLLGLA
CCHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ATVSHTLVVWGIALGGMYLFSNLDAEVAEPYFQLVSAIIIIGVAAWMFRQTWRERVAAKQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YERDVARWEKTRDKSVITQKVDTGHGFMSMEITPQKPAFWRLKVVSGDKWLADDVIVTTE
HHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCEEECCEEEEEC
RPDGSKQKFTFVDRDGYMESIETIAEPYNFTARLSLDHGDHEHDYDLAFQQESTAVSKDD
CCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCC
SGLNLQTEGYQDAHALSHANDIRKRFANRQVTTWQIILFGLTGGLIPCPAAITVLLLCLQ
CCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCCHHHHHHHHHHHH
LEKLSLGAVLVLCFSIGLAITLVVVGAVAAVGVRKATQKFSWLSTAAARAPYFSSALIVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VGLYMGYHGIEGIMNPHHEEEAALSRTNPVVERVQSSM
HHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCC
>Mature Secondary Structure
MESFSSLLAQGGSSAWLFIPSAILLGALHGLEPGHSKTMMAAFIVAVRGTVVQAVLLGLA
CCHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ATVSHTLVVWGIALGGMYLFSNLDAEVAEPYFQLVSAIIIIGVAAWMFRQTWRERVAAKQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YERDVARWEKTRDKSVITQKVDTGHGFMSMEITPQKPAFWRLKVVSGDKWLADDVIVTTE
HHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCEEECCEEEEEC
RPDGSKQKFTFVDRDGYMESIETIAEPYNFTARLSLDHGDHEHDYDLAFQQESTAVSKDD
CCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCC
SGLNLQTEGYQDAHALSHANDIRKRFANRQVTTWQIILFGLTGGLIPCPAAITVLLLCLQ
CCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCCHHHHHHHHHHHH
LEKLSLGAVLVLCFSIGLAITLVVVGAVAAVGVRKATQKFSWLSTAAARAPYFSSALIVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VGLYMGYHGIEGIMNPHHEEEAALSRTNPVVERVQSSM
HHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA