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The map label for this gene is yabI [H]

Identifier: 110632916

GI number: 110632916

Start: 615447

End: 616145

Strand: Reverse

Name: yabI [H]

Synonym: Meso_0557

Alternate gene names: 110632916

Gene position: 616145-615447 (Counterclockwise)

Preceding gene: 110632917

Following gene: 110632915

Centisome position: 13.96

GC content: 55.51

Gene sequence:

>699_bases
ATGGATCAGCTTATCGAGTATGCGGTGCTCTTTATCGAACACAATTCGGTCTATGCGACGGTGGCAGCGTTTCTGATCGC
ATTTGGAGAGTCGCTCTTCATAATCGGATTCGCCATACCAGCCACCGCTCTGATGATAATCCTCGGAGGGCTAATTGGCA
GCGGGACCATTGAAGCCGGGCCGATCGTCGGTTCCGCAATTTTAGGTGCGATCCTAGGAGACGCCGTTTCGTACTGGCTG
GGACGTAAGCTGGGTTGGCAATTCGCCTACAGGTGGCCGTTGAAGAAATATCGAAACGGCACTGCGCGCACACGACTCTT
CTTCAGGAAATACGGGCTGGCGTCCATCTTCCTTGGCCGCTTCCTTGGACCGATACGTTCCACCGTTCCGCTCCTGGCCG
GCATGATGGTGATGAGTCATTTCCGCTTCCAAATTGCGAATGTTTTGTCTGCGATCGCGTGGAGCATCTGCATGCTGATC
CCCGGCTGGATAGCCGGACAGAGCGCTGCTGAATTTGAAGACGGCACATATCTGGAGCGTGGAATGATCATCGCTGCGGT
CAGCCTTGCGATCGTGTTCGTGTCCGGAGTTGTCGCGAAGCGAATATTTCGGCCCTCCCATGATGAGGTGAGATCCAGGC
GCGCAAGAGTACACGGCTGCTGCGGAGGCGCGCATGCCTCGTGCTCGCATCATCATTAA

Upstream 100 bases:

>100_bases
GCCGATCGACGAGTTCAAGGCGATCACCAAGTATCTTTAAAATGTTCGCTGTCTCAATGACAGGTGCGTAGATCATCATC
CCCTCCTACAGGAAGTGATA

Downstream 100 bases:

>100_bases
TGTGTCGTGAGCTATCCCCTCCAACAGGATTGGTTCAAGCGCATCAACTGTCCAACGCGATACACAGCTTGAAAGGAGAA
CTGGAATGCAAGACAAGCCA

Product: DedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MDQLIEYAVLFIEHNSVYATVAAFLIAFGESLFIIGFAIPATALMIILGGLIGSGTIEAGPIVGSAILGAILGDAVSYWL
GRKLGWQFAYRWPLKKYRNGTARTRLFFRKYGLASIFLGRFLGPIRSTVPLLAGMMVMSHFRFQIANVLSAIAWSICMLI
PGWIAGQSAAEFEDGTYLERGMIIAAVSLAIVFVSGVVAKRIFRPSHDEVRSRRARVHGCCGGAHASCSHHH

Sequences:

>Translated_232_residues
MDQLIEYAVLFIEHNSVYATVAAFLIAFGESLFIIGFAIPATALMIILGGLIGSGTIEAGPIVGSAILGAILGDAVSYWL
GRKLGWQFAYRWPLKKYRNGTARTRLFFRKYGLASIFLGRFLGPIRSTVPLLAGMMVMSHFRFQIANVLSAIAWSICMLI
PGWIAGQSAAEFEDGTYLERGMIIAAVSLAIVFVSGVVAKRIFRPSHDEVRSRRARVHGCCGGAHASCSHHH
>Mature_232_residues
MDQLIEYAVLFIEHNSVYATVAAFLIAFGESLFIIGFAIPATALMIILGGLIGSGTIEAGPIVGSAILGAILGDAVSYWL
GRKLGWQFAYRWPLKKYRNGTARTRLFFRKYGLASIFLGRFLGPIRSTVPLLAGMMVMSHFRFQIANVLSAIAWSICMLI
PGWIAGQSAAEFEDGTYLERGMIIAAVSLAIVFVSGVVAKRIFRPSHDEVRSRRARVHGCCGGAHASCSHHH

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1786252, Length=211, Percent_Identity=32.2274881516588, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788656, Length=174, Percent_Identity=28.735632183908, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789481, Length=154, Percent_Identity=27.9220779220779, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25263; Mature: 25263

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLIEYAVLFIEHNSVYATVAAFLIAFGESLFIIGFAIPATALMIILGGLIGSGTIEAG
CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PIVGSAILGAILGDAVSYWLGRKLGWQFAYRWPLKKYRNGTARTRLFFRKYGLASIFLGR
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
FLGPIRSTVPLLAGMMVMSHFRFQIANVLSAIAWSICMLIPGWIAGQSAAEFEDGTYLER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHH
GMIIAAVSLAIVFVSGVVAKRIFRPSHDEVRSRRARVHGCCGGAHASCSHHH
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MDQLIEYAVLFIEHNSVYATVAAFLIAFGESLFIIGFAIPATALMIILGGLIGSGTIEAG
CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PIVGSAILGAILGDAVSYWLGRKLGWQFAYRWPLKKYRNGTARTRLFFRKYGLASIFLGR
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
FLGPIRSTVPLLAGMMVMSHFRFQIANVLSAIAWSICMLIPGWIAGQSAAEFEDGTYLER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHH
GMIIAAVSLAIVFVSGVVAKRIFRPSHDEVRSRRARVHGCCGGAHASCSHHH
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1630901; 9278503 [H]