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The map label for this gene is trbB [H]

Identifier: 110632869

GI number: 110632869

Start: 562526

End: 563515

Strand: Reverse

Name: trbB [H]

Synonym: Meso_0509

Alternate gene names: 110632869

Gene position: 563515-562526 (Counterclockwise)

Preceding gene: 110632872

Following gene: 110632868

Centisome position: 12.77

GC content: 69.6

Gene sequence:

>990_bases
GTGGCGGTCAACCATCAGCAATCGGAAGCAGCCTCACGCGGTGCACGCATGCTGCGCACCGCGCTGGGGCCTGCGGTCGC
CCGATTCCTGGAAGACCCCGCGATCGTCGAGGTCATGCTCAACCCCGATGGGCGGCTCTGGGTCGACCGGCTCTCTGACG
GCCTGTCCGATACGGGGGAACGACTTTCGGCCGCCGATGGCGAACGCATCATCCGCCTCGTCGCCCATCATGTCGGTGCC
GAGGTGCATGACCGACGGCCGCGTGTCTCGGCTGAACTGCCCGAAACCGGCGAGCGCTTCGAAGGCCTGCTGCCGCCGGT
CGTGACGGCTCCGGTCTTTGCGATTCGCAAGCCTGCCGTCGCCGTCTTCACGCTCGACGACTATGTCGCCGCGGGCATCA
TGACGGCCGACCAGGCCGCCATCCTCCGGCAGGCGGTCGCAGCGCGCGCCAACGTCCTCGTTGCCGGCGGAACCAGCACC
GGCAAGACCACGCTGACCAATGCCCTGCTGGCCGAGGTCGCGAAGACAACCGACCGCGTCATCGTCATCGAAGACACCCG
CGAGCTGCAATGCAGGGCGCAGAACATCATCGCCATGCGCACCAAGGACGGCGTCGCGACCCTGTCCGACCTGGTGCGCT
CCTCGCTGCGGCTGCGGCCGGATCGGATCCCGATCGGCGAGGTGCGTGGGGCTGAGGCGCTCGATCTCCTGAAGGCCTGG
GGCACCGGCCATCCCGGCGGGATCGGCACGATCCACGCGGGCACCGCGCTCGGCGCGCTGCGCCGCCTCGAGCAGCTCAT
CCAGGAAGCTGTCGTCACCGTCCCCCGGGCGCTGATCGCCGAGACCATCGATCTGGTGGCCGTGCTCTCCGGCCGCGGCG
CAGCGCGGCGTCTCGCCGAACTCGCGCGCGTCGAAGGGCTCGGGACGGACACCGACTACCGCCTTTCCCCCGCAACCCAG
CCTCCCGACCCACAAGGAGAACCCGCATGA

Upstream 100 bases:

>100_bases
ACCCCCTGAGCGTTGTTGCAACGCCCCAATTCCTGCCTTTCTTACTCATCCCCGATCCAGGGCCGCGCATCGCGCGGGCC
CGCAAGCGAACGGGGACGAC

Downstream 100 bases:

>100_bases
TCCAACCTATCGCGCGCGGCCATCAGCGCCTCGCAACCGCCGCCACGGCGCTGACCCTGAGCTTTCTTCTGGCGCCCGCC
GCCCATGCATCCGGCTCCTC

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MAVNHQQSEAASRGARMLRTALGPAVARFLEDPAIVEVMLNPDGRLWVDRLSDGLSDTGERLSAADGERIIRLVAHHVGA
EVHDRRPRVSAELPETGERFEGLLPPVVTAPVFAIRKPAVAVFTLDDYVAAGIMTADQAAILRQAVAARANVLVAGGTST
GKTTLTNALLAEVAKTTDRVIVIEDTRELQCRAQNIIAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
GTGHPGGIGTIHAGTALGALRRLEQLIQEAVVTVPRALIAETIDLVAVLSGRGAARRLAELARVEGLGTDTDYRLSPATQ
PPDPQGEPA

Sequences:

>Translated_329_residues
MAVNHQQSEAASRGARMLRTALGPAVARFLEDPAIVEVMLNPDGRLWVDRLSDGLSDTGERLSAADGERIIRLVAHHVGA
EVHDRRPRVSAELPETGERFEGLLPPVVTAPVFAIRKPAVAVFTLDDYVAAGIMTADQAAILRQAVAARANVLVAGGTST
GKTTLTNALLAEVAKTTDRVIVIEDTRELQCRAQNIIAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
GTGHPGGIGTIHAGTALGALRRLEQLIQEAVVTVPRALIAETIDLVAVLSGRGAARRLAELARVEGLGTDTDYRLSPATQ
PPDPQGEPA
>Mature_328_residues
AVNHQQSEAASRGARMLRTALGPAVARFLEDPAIVEVMLNPDGRLWVDRLSDGLSDTGERLSAADGERIIRLVAHHVGAE
VHDRRPRVSAELPETGERFEGLLPPVVTAPVFAIRKPAVAVFTLDDYVAAGIMTADQAAILRQAVAARANVLVAGGTSTG
KTTLTNALLAEVAKTTDRVIVIEDTRELQCRAQNIIAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWG
TGHPGGIGTIHAGTALGALRRLEQLIQEAVVTVPRALIAETIDLVAVLSGRGAARRLAELARVEGLGTDTDYRLSPATQP
PDPQGEPA

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 34932; Mature: 34801

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVNHQQSEAASRGARMLRTALGPAVARFLEDPAIVEVMLNPDGRLWVDRLSDGLSDTGE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEHHHHHCCHHHHHH
RLSAADGERIIRLVAHHVGAEVHDRRPRVSAELPETGERFEGLLPPVVTAPVFAIRKPAV
HHHHCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCE
AVFTLDDYVAAGIMTADQAAILRQAVAARANVLVAGGTSTGKTTLTNALLAEVAKTTDRV
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCE
IVIEDTRELQCRAQNIIAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
EEEECCHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
GTGHPGGIGTIHAGTALGALRRLEQLIQEAVVTVPRALIAETIDLVAVLSGRGAARRLAE
CCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LARVEGLGTDTDYRLSPATQPPDPQGEPA
HHHHCCCCCCCCCEECCCCCCCCCCCCCC
>Mature Secondary Structure 
AVNHQQSEAASRGARMLRTALGPAVARFLEDPAIVEVMLNPDGRLWVDRLSDGLSDTGE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEHHHHHCCHHHHHH
RLSAADGERIIRLVAHHVGAEVHDRRPRVSAELPETGERFEGLLPPVVTAPVFAIRKPAV
HHHHCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCE
AVFTLDDYVAAGIMTADQAAILRQAVAARANVLVAGGTSTGKTTLTNALLAEVAKTTDRV
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCE
IVIEDTRELQCRAQNIIAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
EEEECCHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
GTGHPGGIGTIHAGTALGALRRLEQLIQEAVVTVPRALIAETIDLVAVLSGRGAARRLAE
CCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LARVEGLGTDTDYRLSPATQPPDPQGEPA
HHHHCCCCCCCCCEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]