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The map label for this gene is trbF [H]

Identifier: 110632862

GI number: 110632862

Start: 556379

End: 557068

Strand: Reverse

Name: trbF [H]

Synonym: Meso_0502

Alternate gene names: 110632862

Gene position: 557068-556379 (Counterclockwise)

Preceding gene: 110632863

Following gene: 110632861

Centisome position: 12.62

GC content: 66.96

Gene sequence:

>690_bases
ATGAGCTTCTTCAAGCGACCCGCAACCCACTATGGAAAGACGCCCGGGCCCGAGACGCCGTATCAGCGCGCGGCGCAGAT
CTGGGATGATCGAATCGGCTCAGCGCGTGTCCAGGCCCGAAACTGGCGGCTCATGGCCTTCGGCTGCCTGATCCTCTCCG
CCGGCTTCGCTGCCGCGCTGGTCTGGCAGTCGGCGCGCGGGACCATCGTCCCGTGGGTGGTGCAGGTCGACAATCTCGGC
CAGGCGCAGGCGGTCGCGCCAGCGCAGGCCGACTACCGCCCCACCGACCCGCAGGTGGCCTGGCATCTGGCGCGGTTCAT
CGAGCAGGTCCGCTCGATCCCGGCCGACGCCATCGTCGTGCGGCAGAATTGGCTGCGCGCCTACGAGTTCACGACCGATC
GCGGCGCGGCGGCCCTCAATGACTTCGCCCGCGCCAACGATCCGTTCACCCGCGTCGGGAAGCAGCAGGTGTCGATCGAA
GTGTCGAGCGTTATCCGCGCGTCGCCTGACAGCTTCCGCGTCGCCTGGACCGAACGCCAATACGAGAACGGCCAGCTCTC
CACGACACAACGCTGGACAGCCATCCTGACCATCGTGATCCAACCCCCACGCGACGCAGAGCGGCTGCGGGCCAATCCGC
TCGGAATCTACGTCAACGCCATCAACTGGTCTCGGGAGATGGGGCAATGA

Upstream 100 bases:

>100_bases
AGACCATGAGCCACGGCGTCACGCTCGCGGCACACGCGATCCGATCGGGCGACAGCCACGGCGGCGGCTCTTCCATCAAT
CTCTCCGGAGGCGACCGCAC

Downstream 100 bases:

>100_bases
GAGATCATCTCCGCCGATCCGCGAGCCGCAGCTTCCGTCTATCCGGCTCTGCGCTTTTGCTGATCTCCGGATTGGCGCTG
GCCGGCTGCGCGACCAACCG

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MSFFKRPATHYGKTPGPETPYQRAAQIWDDRIGSARVQARNWRLMAFGCLILSAGFAAALVWQSARGTIVPWVVQVDNLG
QAQAVAPAQADYRPTDPQVAWHLARFIEQVRSIPADAIVVRQNWLRAYEFTTDRGAAALNDFARANDPFTRVGKQQVSIE
VSSVIRASPDSFRVAWTERQYENGQLSTTQRWTAILTIVIQPPRDAERLRANPLGIYVNAINWSREMGQ

Sequences:

>Translated_229_residues
MSFFKRPATHYGKTPGPETPYQRAAQIWDDRIGSARVQARNWRLMAFGCLILSAGFAAALVWQSARGTIVPWVVQVDNLG
QAQAVAPAQADYRPTDPQVAWHLARFIEQVRSIPADAIVVRQNWLRAYEFTTDRGAAALNDFARANDPFTRVGKQQVSIE
VSSVIRASPDSFRVAWTERQYENGQLSTTQRWTAILTIVIQPPRDAERLRANPLGIYVNAINWSREMGQ
>Mature_228_residues
SFFKRPATHYGKTPGPETPYQRAAQIWDDRIGSARVQARNWRLMAFGCLILSAGFAAALVWQSARGTIVPWVVQVDNLGQ
AQAVAPAQADYRPTDPQVAWHLARFIEQVRSIPADAIVVRQNWLRAYEFTTDRGAAALNDFARANDPFTRVGKQQVSIEV
SSVIRASPDSFRVAWTERQYENGQLSTTQRWTAILTIVIQPPRDAERLRANPLGIYVNAINWSREMGQ

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 25782; Mature: 25651

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFFKRPATHYGKTPGPETPYQRAAQIWDDRIGSARVQARNWRLMAFGCLILSAGFAAAL
CCCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCEEHHHHHHHHHHHHHHHHH
VWQSARGTIVPWVVQVDNLGQAQAVAPAQADYRPTDPQVAWHLARFIEQVRSIPADAIVV
HHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
RQNWLRAYEFTTDRGAAALNDFARANDPFTRVGKQQVSIEVSSVIRASPDSFRVAWTERQ
HHHHHHHHEECCCCCHHHHHHHHHCCCCHHHHCCHHEEEEHHHHHHCCCCCEEEEEECCC
YENGQLSTTQRWTAILTIVIQPPRDAERLRANPLGIYVNAINWSREMGQ
CCCCCCCCHHHEEEEEEEEEECCCCHHHHCCCCCEEEEEEEECCHHHCC
>Mature Secondary Structure 
SFFKRPATHYGKTPGPETPYQRAAQIWDDRIGSARVQARNWRLMAFGCLILSAGFAAAL
CCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCEEHHHHHHHHHHHHHHHHH
VWQSARGTIVPWVVQVDNLGQAQAVAPAQADYRPTDPQVAWHLARFIEQVRSIPADAIVV
HHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
RQNWLRAYEFTTDRGAAALNDFARANDPFTRVGKQQVSIEVSSVIRASPDSFRVAWTERQ
HHHHHHHHEECCCCCHHHHHHHHHCCCCHHHHCCHHEEEEHHHHHHCCCCCEEEEEECCC
YENGQLSTTQRWTAILTIVIQPPRDAERLRANPLGIYVNAINWSREMGQ
CCCCCCCCHHHEEEEEEEEEECCCCHHHHCCCCCEEEEEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]