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The map label for this gene is trbI [H]

Identifier: 110632860

GI number: 110632860

Start: 554206

End: 555405

Strand: Reverse

Name: trbI [H]

Synonym: Meso_0500

Alternate gene names: 110632860

Gene position: 555405-554206 (Counterclockwise)

Preceding gene: 110632861

Following gene: 110632859

Centisome position: 12.59

GC content: 68.33

Gene sequence:

>1200_bases
ATGAGCGAGCGCGACACGCCCAACGAAGCCGACGCACCGCTGGTCGGCACACCGCCCGACGATGCCGCTGCGCCCATGCG
GCTGCGCGCCGAACCGCCCCGGGTCACCCGACTGTCGCGAAAGGTGCTGGGCGGTATCAGTCTCGTCGCCGCCCTCGGGG
TCGGTGGCGCGCTCATCTATGCGCTTCAGACGCGCAGTATCGGCCCTGGCAGTGAGGAGCTTTACTCCACGCAAAATCGG
CGAACCGCGGACGGGCTTGCCGGCCTGCCACGCGACTACACCGGCCCGGTGCTCGGGCCTCCGCTGCCCGGAGATCTGGG
GCGACCCATCCTCGATGCGCAGAATCGTGGCCAGCCCGTCACGCCGCCGATGGCGGCAGCGCCCACCGTCGATCCGGTTG
AGCAGCGCAGGCGCGCGGAAGAAGAAGCTGCCCTAACGAGCCGCGTCTTCTTTCAGACGGAGGCGCGCGTCGCAGCTCCG
ATTGCGACAGCTGGCGGACCAGGCAGCCCGAGCCTCTCTGGGCTAGGTCTTCCGGGCCAGCCGGGGGCAGCGACGGCGCA
GGATCGCCAGCTCGCGTTCCTGAATGCGGGCGTGGACCGCCGCACGGTCTCGCCAGATCGCGTGATGGGTCCGGCGTCGC
CCTATGTGCTTCAGACCGGCGCCGTCATCGCCGCGGCCCTCATCACCGGCATCCGATCCGACCTGCCGGGCCAGATCACT
GCGCAGGTCACGGAGCATGTCTACGACAGCCCGACCGGGCGCATCCTGCTCGTCCCACAGGGCACGCGGCTGATCGGCGA
GTACAGCAACGATGTCGGCTTCGGTCAGCGCCGGGTGCTGCTCGTCTGGAAGCGGCTCATCCTCCCGAATGGCCGTTCGA
TCGTCCTGGAACGTCAACCCGGAGCCGACGCGCAAGGCTATGCGGGTCTCCAGGATGGCGTCGACTATCACTGGTGGGAT
CTCGCCAAGGCTGCCGGCCTGTCGACACTGCTGTCGGTCGGCGCCGAACTCGCCGTTGACGATCAGGATCGGCTGCTCCG
GGCGATCCGCAACGGCGGGCAGGACACCATCAACGATGCAGGGCAGCAGATCATCCGTCGGCAACTCAATGTCGCGCCGA
CCCTGACGATCAGACCGGGGTTCCCCGTGCGCGTCATCGTCACCCGCGACCTCGTGCTCGAACCTTATGGAGGGTTGTGA

Upstream 100 bases:

>100_bases
TGATCGTCGACCGCCTGTTCGGCGCCGCCGAGCTCCGTCTCGGCAGTGGCGAGCGCCAGCAGACGGTCCGGATCGTTCGC
ACCGATGGGAGGCCCGCGTC

Downstream 100 bases:

>100_bases
TGACCAAGCTGAAGCTCGGCCCGATCATCGACGACAAGCCGGTCAAGGTGACGATTGAACTCCCTGCGCCGCTGCATCGG
GACCTCGTCGCCTACGCCGC

Product: conjugation TrbI-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MSERDTPNEADAPLVGTPPDDAAAPMRLRAEPPRVTRLSRKVLGGISLVAALGVGGALIYALQTRSIGPGSEELYSTQNR
RTADGLAGLPRDYTGPVLGPPLPGDLGRPILDAQNRGQPVTPPMAAAPTVDPVEQRRRAEEEAALTSRVFFQTEARVAAP
IATAGGPGSPSLSGLGLPGQPGAATAQDRQLAFLNAGVDRRTVSPDRVMGPASPYVLQTGAVIAAALITGIRSDLPGQIT
AQVTEHVYDSPTGRILLVPQGTRLIGEYSNDVGFGQRRVLLVWKRLILPNGRSIVLERQPGADAQGYAGLQDGVDYHWWD
LAKAAGLSTLLSVGAELAVDDQDRLLRAIRNGGQDTINDAGQQIIRRQLNVAPTLTIRPGFPVRVIVTRDLVLEPYGGL

Sequences:

>Translated_399_residues
MSERDTPNEADAPLVGTPPDDAAAPMRLRAEPPRVTRLSRKVLGGISLVAALGVGGALIYALQTRSIGPGSEELYSTQNR
RTADGLAGLPRDYTGPVLGPPLPGDLGRPILDAQNRGQPVTPPMAAAPTVDPVEQRRRAEEEAALTSRVFFQTEARVAAP
IATAGGPGSPSLSGLGLPGQPGAATAQDRQLAFLNAGVDRRTVSPDRVMGPASPYVLQTGAVIAAALITGIRSDLPGQIT
AQVTEHVYDSPTGRILLVPQGTRLIGEYSNDVGFGQRRVLLVWKRLILPNGRSIVLERQPGADAQGYAGLQDGVDYHWWD
LAKAAGLSTLLSVGAELAVDDQDRLLRAIRNGGQDTINDAGQQIIRRQLNVAPTLTIRPGFPVRVIVTRDLVLEPYGGL
>Mature_398_residues
SERDTPNEADAPLVGTPPDDAAAPMRLRAEPPRVTRLSRKVLGGISLVAALGVGGALIYALQTRSIGPGSEELYSTQNRR
TADGLAGLPRDYTGPVLGPPLPGDLGRPILDAQNRGQPVTPPMAAAPTVDPVEQRRRAEEEAALTSRVFFQTEARVAAPI
ATAGGPGSPSLSGLGLPGQPGAATAQDRQLAFLNAGVDRRTVSPDRVMGPASPYVLQTGAVIAAALITGIRSDLPGQITA
QVTEHVYDSPTGRILLVPQGTRLIGEYSNDVGFGQRRVLLVWKRLILPNGRSIVLERQPGADAQGYAGLQDGVDYHWWDL
AKAAGLSTLLSVGAELAVDDQDRLLRAIRNGGQDTINDAGQQIIRRQLNVAPTLTIRPGFPVRVIVTRDLVLEPYGGL

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 42147; Mature: 42016

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERDTPNEADAPLVGTPPDDAAAPMRLRAEPPRVTRLSRKVLGGISLVAALGVGGALIY
CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
ALQTRSIGPGSEELYSTQNRRTADGLAGLPRDYTGPVLGPPLPGDLGRPILDAQNRGQPV
EEECCCCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TPPMAAAPTVDPVEQRRRAEEEAALTSRVFFQTEARVAAPIATAGGPGSPSLSGLGLPGQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEECCCCCCCCCCCCCCCCCC
PGAATAQDRQLAFLNAGVDRRTVSPDRVMGPASPYVLQTGAVIAAALITGIRSDLPGQIT
CCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCHHH
AQVTEHVYDSPTGRILLVPQGTRLIGEYSNDVGFGQRRVLLVWKRLILPNGRSIVLERQP
HHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCC
GADAQGYAGLQDGVDYHWWDLAKAAGLSTLLSVGAELAVDDQDRLLRAIRNGGQDTINDA
CCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCCCHHHHHH
GQQIIRRQLNVAPTLTIRPGFPVRVIVTRDLVLEPYGGL
HHHHHHHHHCCCCEEEECCCCCEEEEEEECEEECCCCCC
>Mature Secondary Structure 
SERDTPNEADAPLVGTPPDDAAAPMRLRAEPPRVTRLSRKVLGGISLVAALGVGGALIY
CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
ALQTRSIGPGSEELYSTQNRRTADGLAGLPRDYTGPVLGPPLPGDLGRPILDAQNRGQPV
EEECCCCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TPPMAAAPTVDPVEQRRRAEEEAALTSRVFFQTEARVAAPIATAGGPGSPSLSGLGLPGQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEECCCCCCCCCCCCCCCCCC
PGAATAQDRQLAFLNAGVDRRTVSPDRVMGPASPYVLQTGAVIAAALITGIRSDLPGQIT
CCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCHHH
AQVTEHVYDSPTGRILLVPQGTRLIGEYSNDVGFGQRRVLLVWKRLILPNGRSIVLERQP
HHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCC
GADAQGYAGLQDGVDYHWWDLAKAAGLSTLLSVGAELAVDDQDRLLRAIRNGGQDTINDA
CCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCCCHHHHHH
GQQIIRRQLNVAPTLTIRPGFPVRVIVTRDLVLEPYGGL
HHHHHHHHHCCCCEEEECCCCCEEEEEEECEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]