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The map label for this gene is cynR [C]

Identifier: 110632487

GI number: 110632487

Start: 152803

End: 153714

Strand: Reverse

Name: cynR [C]

Synonym: Meso_0125

Alternate gene names: 110632487

Gene position: 153714-152803 (Counterclockwise)

Preceding gene: 110632488

Following gene: 110632486

Centisome position: 3.48

GC content: 53.29

Gene sequence:

>912_bases
ATGCGAAATATCAGCATAAGAAAAATGTGGGTTTTCACCTGCGCTGTGGACGAAGGCAGCTTTACCGACGGTGCTCGGCG
CGCTCATATCTCACAGCCGGCTGCAGTCAACATTATCGATGAAATCGAGGAAACCGTGGGAGAACCGCTCTTCGAGCGTT
CAGGCAAGACACGGCGCGCCATCCTCAATGCCCGGGGCAAGGAGGTCTACGACACCTTCGTCCGCACGCTTGCCGTTTAC
GAGCGCGCATTGGAGAGCATCTGCTCGAGCAAGCTGCAACGCCGCGTGCAGAAGATCCTCATTCAAAGCCCGTATGTCGC
TTCGGTATCGGCGCTATGGCTCCGAAACCTGATTCCGCATCGGGCCGACACCCAGCTTTGCATCCATTGCGCTGGCTGGC
GGGAAATCATCACGGCGATAGAGAACCGCGAAGATTGCATGGCGCTGATCGACGGCGATATCCGTCCCAAGAACAGCGAG
TATTTTACAATCGGAAACGTGGAAATGGTCTTTATCGTCCCCGAGACCAATCGTCATTTCAATACAGATCTGCGGGAAAT
CACGTGGGAGGATGTGCCGGCGGATACCCTTATCTATTCCGACATATGTCCTTTGGCCCTGGAGCGCGCCTACGGCAACC
TCAAAGCGGCCCAGAACAACGCAAATGCTTTCACCGAGGTGAATTGCAGCACACTCCTGAAGAACTTCTGCCGCAAAGCA
GGAGTGCCGGCCATCGTTCCGAAGAATCTCATGGAGATTGATGACAACGATATCCGCTTTTGCTGCTGCTCGTTTGCATA
CTCCAAGATTTTCATACCGCTTGGTATCTCGATTTCGCATGGAAACCGCATGAGAGGGAAAATCCTCGGACGCGATATCG
AAAACGTCTTCGACAACCGTTTTTACATATAA

Upstream 100 bases:

>100_bases
CCTCGGAGGCGATAACGTCATTCCGCCTTGTTTATGAGGATTTTACGGGCCGGTGTCACGAAAAGCATAGTTTTTTGTAT
TTTCTTTTTATGGGTTTTGT

Downstream 100 bases:

>100_bases
GAGGGGACCGGGAATGCACGCCTTGAGCAGCGGGCCCAACCTCATCGACGACGAGTTCGGAAAGTTTCCGCGTTATATGA
GCCTTATACCCGACGTTTTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MRNISIRKMWVFTCAVDEGSFTDGARRAHISQPAAVNIIDEIEETVGEPLFERSGKTRRAILNARGKEVYDTFVRTLAVY
ERALESICSSKLQRRVQKILIQSPYVASVSALWLRNLIPHRADTQLCIHCAGWREIITAIENREDCMALIDGDIRPKNSE
YFTIGNVEMVFIVPETNRHFNTDLREITWEDVPADTLIYSDICPLALERAYGNLKAAQNNANAFTEVNCSTLLKNFCRKA
GVPAIVPKNLMEIDDNDIRFCCCSFAYSKIFIPLGISISHGNRMRGKILGRDIENVFDNRFYI

Sequences:

>Translated_303_residues
MRNISIRKMWVFTCAVDEGSFTDGARRAHISQPAAVNIIDEIEETVGEPLFERSGKTRRAILNARGKEVYDTFVRTLAVY
ERALESICSSKLQRRVQKILIQSPYVASVSALWLRNLIPHRADTQLCIHCAGWREIITAIENREDCMALIDGDIRPKNSE
YFTIGNVEMVFIVPETNRHFNTDLREITWEDVPADTLIYSDICPLALERAYGNLKAAQNNANAFTEVNCSTLLKNFCRKA
GVPAIVPKNLMEIDDNDIRFCCCSFAYSKIFIPLGISISHGNRMRGKILGRDIENVFDNRFYI
>Mature_303_residues
MRNISIRKMWVFTCAVDEGSFTDGARRAHISQPAAVNIIDEIEETVGEPLFERSGKTRRAILNARGKEVYDTFVRTLAVY
ERALESICSSKLQRRVQKILIQSPYVASVSALWLRNLIPHRADTQLCIHCAGWREIITAIENREDCMALIDGDIRPKNSE
YFTIGNVEMVFIVPETNRHFNTDLREITWEDVPADTLIYSDICPLALERAYGNLKAAQNNANAFTEVNCSTLLKNFCRKA
GVPAIVPKNLMEIDDNDIRFCCCSFAYSKIFIPLGISISHGNRMRGKILGRDIENVFDNRFYI

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34477; Mature: 34477

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50931 HTH_LYSR ; PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNISIRKMWVFTCAVDEGSFTDGARRAHISQPAAVNIIDEIEETVGEPLFERSGKTRRA
CCCCCEEEEEEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCHHHHHCCCHHHH
ILNARGKEVYDTFVRTLAVYERALESICSSKLQRRVQKILIQSPYVASVSALWLRNLIPH
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
RADTQLCIHCAGWREIITAIENREDCMALIDGDIRPKNSEYFTIGNVEMVFIVPETNRHF
CCCCEEEEEECCHHHHHHHHHCHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEECCCCCC
NTDLREITWEDVPADTLIYSDICPLALERAYGNLKAAQNNANAFTEVNCSTLLKNFCRKA
CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEECCHHHHHHHHHHHC
GVPAIVPKNLMEIDDNDIRFCCCSFAYSKIFIPLGISISHGNRMRGKILGRDIENVFDNR
CCCCCCCCHHHHCCCCCHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHCCHHHHHHCCC
FYI
CCC
>Mature Secondary Structure
MRNISIRKMWVFTCAVDEGSFTDGARRAHISQPAAVNIIDEIEETVGEPLFERSGKTRRA
CCCCCEEEEEEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCHHHHHCCCHHHH
ILNARGKEVYDTFVRTLAVYERALESICSSKLQRRVQKILIQSPYVASVSALWLRNLIPH
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
RADTQLCIHCAGWREIITAIENREDCMALIDGDIRPKNSEYFTIGNVEMVFIVPETNRHF
CCCCEEEEEECCHHHHHHHHHCHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEECCCCCC
NTDLREITWEDVPADTLIYSDICPLALERAYGNLKAAQNNANAFTEVNCSTLLKNFCRKA
CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEECCHHHHHHHHHHHC
GVPAIVPKNLMEIDDNDIRFCCCSFAYSKIFIPLGISISHGNRMRGKILGRDIENVFDNR
CCCCCCCCHHHHCCCCCHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHCCHHHHHHCCC
FYI
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA