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The map label for this gene is yscJ [H]

Identifier: 110632466

GI number: 110632466

Start: 133709

End: 134509

Strand: Direct

Name: yscJ [H]

Synonym: Meso_0104

Alternate gene names: 110632466

Gene position: 133709-134509 (Clockwise)

Preceding gene: 110632465

Following gene: 110632467

Centisome position: 3.03

GC content: 59.55

Gene sequence:

>801_bases
ATGCACTCCCTAGCCTTTCCTCCGCTGGATTGCTCTCGTCCCCGCCTGAGCCGGCTTGGCGCGGTGCTCCTCGCTTTTGC
GCTCTGCGCCTTTTTATCCGCCTGCAAGGTGCCCCTCTATTCCGGGTTGAGCGAGCAGGAAGCCAACGACATGCTCGGAA
AGCTTCTGGAGTACGATATCGATGCCACAAAGCAGGCGGACAAGGATAATTACATCACGCTGCTTGTGGACGAGGCGCAG
TTTGGCCAGGCCGTGGACCTTCTTAAAAGTTTCGGCCTGCCGCGACCTCAATTCGAGACGATCGGCAAAGTGTTTACCGG
CGACGGGCTTGTGACAAGCCCGGTAAAGGAGTGGGCACGCCTGAACTTCGCGCTATCGCAGGAATTGTCGAAGATGGTGT
CTTCCATCCCCGGCGTGGTTTTGGCGGAAGTGCAAATAGCCAACCCGCGCAAAACCACACCTTTCGATGAAGTGCCGCCG
CCCAGCGCCTCCGTCCTTGCAATCGTAAACAGGAGTGCCGTGACCGCTGAGCTCGTTCCGCGGATAAGGCAGCTTGTCGC
CCACAGCATCGAAAACGTTCAGTACGAAAAGGTTGGCGTGGTCGTGTTGCCTGTAGATCCACCTCCCCCGCCCACCATCG
AATTTGTATCCCTGGGCGGGGTGGCCATCCGCAAGGGCGGTGAGGAGCGTGCCGTCCTTTTGGCCGGCGGAATAGCGGTT
TTCAGCCTGGTTCTTGGCGCGGCGGCAGCACTAAGCGTTGGAACCTACTTGCGCTCGCGCCGGAAGGAGCGCGTCGGATG
A

Upstream 100 bases:

>100_bases
ACAAGGTGGCGTACAACGCCGACAAAATCCGGCTCGAATTGTCCATAAAGGCGATCGGCAAAGTGATAAGCGGCGTGCAG
CAGCTGCTGTCGAGTCAGTG

Downstream 100 bases:

>100_bases
AGCCTGCTTGCCCCTTCGATGCGGCGCCATTGGAGTACATACTGCCGGATAAGCTGCCCGCGGCGCTTGGCCTGCAAAAT
GCCGGTATAGCTGCCAGCCT

Product: YscJ/HrcJ family type III secretion apparatus lipoprotein

Products: NA

Alternate protein names: Lipoprotein ylpB [H]

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MHSLAFPPLDCSRPRLSRLGAVLLAFALCAFLSACKVPLYSGLSEQEANDMLGKLLEYDIDATKQADKDNYITLLVDEAQ
FGQAVDLLKSFGLPRPQFETIGKVFTGDGLVTSPVKEWARLNFALSQELSKMVSSIPGVVLAEVQIANPRKTTPFDEVPP
PSASVLAIVNRSAVTAELVPRIRQLVAHSIENVQYEKVGVVVLPVDPPPPPTIEFVSLGGVAIRKGGEERAVLLAGGIAV
FSLVLGAAAALSVGTYLRSRRKERVG

Sequences:

>Translated_266_residues
MHSLAFPPLDCSRPRLSRLGAVLLAFALCAFLSACKVPLYSGLSEQEANDMLGKLLEYDIDATKQADKDNYITLLVDEAQ
FGQAVDLLKSFGLPRPQFETIGKVFTGDGLVTSPVKEWARLNFALSQELSKMVSSIPGVVLAEVQIANPRKTTPFDEVPP
PSASVLAIVNRSAVTAELVPRIRQLVAHSIENVQYEKVGVVVLPVDPPPPPTIEFVSLGGVAIRKGGEERAVLLAGGIAV
FSLVLGAAAALSVGTYLRSRRKERVG
>Mature_266_residues
MHSLAFPPLDCSRPRLSRLGAVLLAFALCAFLSACKVPLYSGLSEQEANDMLGKLLEYDIDATKQADKDNYITLLVDEAQ
FGQAVDLLKSFGLPRPQFETIGKVFTGDGLVTSPVKEWARLNFALSQELSKMVSSIPGVVLAEVQIANPRKTTPFDEVPP
PSASVLAIVNRSAVTAELVPRIRQLVAHSIENVQYEKVGVVVLPVDPPPPPTIEFVSLGGVAIRKGGEERAVLLAGGIAV
FSLVLGAAAALSVGTYLRSRRKERVG

Specific function: Required for the export process of the Yop proteins [H]

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 28502; Mature: 28502

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSLAFPPLDCSRPRLSRLGAVLLAFALCAFLSACKVPLYSGLSEQEANDMLGKLLEYDI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHCC
DATKQADKDNYITLLVDEAQFGQAVDLLKSFGLPRPQFETIGKVFTGDGLVTSPVKEWAR
CCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
LNFALSQELSKMVSSIPGVVLAEVQIANPRKTTPFDEVPPPSASVLAIVNRSAVTAELVP
HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHH
RIRQLVAHSIENVQYEKVGVVVLPVDPPPPPTIEFVSLGGVAIRKGGEERAVLLAGGIAV
HHHHHHHHHHHCCEEEHEEEEEEECCCCCCCCEEEEECCCEEEECCCCCCEEEEECHHHH
FSLVLGAAAALSVGTYLRSRRKERVG
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHSLAFPPLDCSRPRLSRLGAVLLAFALCAFLSACKVPLYSGLSEQEANDMLGKLLEYDI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHCC
DATKQADKDNYITLLVDEAQFGQAVDLLKSFGLPRPQFETIGKVFTGDGLVTSPVKEWAR
CCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
LNFALSQELSKMVSSIPGVVLAEVQIANPRKTTPFDEVPPPSASVLAIVNRSAVTAELVP
HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHH
RIRQLVAHSIENVQYEKVGVVVLPVDPPPPPTIEFVSLGGVAIRKGGEERAVLLAGGIAV
HHHHHHHHHHHCCEEEHEEEEEEECCCCCCCCEEEEECCCEEEECCCCCCEEEEECHHHH
FSLVLGAAAALSVGTYLRSRRKERVG
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1860816 [H]