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The map label for this gene is agmR [H]

Identifier: 110632453

GI number: 110632453

Start: 122150

End: 122806

Strand: Reverse

Name: agmR [H]

Synonym: Meso_0091

Alternate gene names: 110632453

Gene position: 122806-122150 (Counterclockwise)

Preceding gene: 110632454

Following gene: 110632451

Centisome position: 2.78

GC content: 60.58

Gene sequence:

>657_bases
TTGCCGGACTATCGTTTCGTCGTTGCGGACGATCATCCGCTTTTTCGGGGAGCTTTGCAGCAGGCCCTGAGCGGCTTCGG
CGCCGATTGTGAAATCCTGGAAGCGGAAGATTTCGAGAGCGCAAAAGCAGCTATTGACGGCGATCTCGACATCGATCTCG
TGCTGCTCGATCTTGCGATGCCCGGTGCGAGCGGGCTTTCCGGCCTGGTGGCGCTACGCGGCCTGGCTCCGGCCGTGCCC
ATCGTTATTGTCTCCGCGCATGACGACCCACAGACAATCCGCCGCGCGGTAGAACTCGGCGCCTCCGGCTTCATTTCGAA
GTCGGCTCGCATGGAAGAGTTGCGCCGCGCGGTGCAGACAGTGCTCGACGGCGGCATTTACACTCCCGGCGGGATCGATC
TCGGCGAGGAGGGCGATGCTGAGATTTCCGAACTGATTGCCCGGTTGCGCACGCTCACGCCCCAGCAAACGCGTGTTTTG
GCCATGCTGGCCGAAGGGCTTCTAAACAAGCAGATCGCCTACGCCTTGAACGTTTCGGAGGCGACGATCAAGGCGCATGT
CTCCGCAATACTGCAGAAGCTCCGGGTCGATAGCCGCACTCAGGCTGTGATCTGCCTCTCACGTATCGGCGCGGGAACTC
TTTCCGAAAACATTTAG

Upstream 100 bases:

>100_bases
GACGGCTCCAGCCTTGCAAAGCGCGCCGATCCCCGCATAATCTTCCCCCTGTCGGCTCGAAGCGAACACAAGAAGAGAGT
AGCCGGTCGGGGAGGTCTGT

Downstream 100 bases:

>100_bases
GCATCGATCGATCGCATACGATCATTCAGCTGCAAGCACCTGGCGATAGCGCATCAGGAGCACACGGAGCGAGGCCGGTT
TGATGGGCTTGTTGAGCACC

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MPDYRFVVADDHPLFRGALQQALSGFGADCEILEAEDFESAKAAIDGDLDIDLVLLDLAMPGASGLSGLVALRGLAPAVP
IVIVSAHDDPQTIRRAVELGASGFISKSARMEELRRAVQTVLDGGIYTPGGIDLGEEGDAEISELIARLRTLTPQQTRVL
AMLAEGLLNKQIAYALNVSEATIKAHVSAILQKLRVDSRTQAVICLSRIGAGTLSENI

Sequences:

>Translated_218_residues
MPDYRFVVADDHPLFRGALQQALSGFGADCEILEAEDFESAKAAIDGDLDIDLVLLDLAMPGASGLSGLVALRGLAPAVP
IVIVSAHDDPQTIRRAVELGASGFISKSARMEELRRAVQTVLDGGIYTPGGIDLGEEGDAEISELIARLRTLTPQQTRVL
AMLAEGLLNKQIAYALNVSEATIKAHVSAILQKLRVDSRTQAVICLSRIGAGTLSENI
>Mature_217_residues
PDYRFVVADDHPLFRGALQQALSGFGADCEILEAEDFESAKAAIDGDLDIDLVLLDLAMPGASGLSGLVALRGLAPAVPI
VIVSAHDDPQTIRRAVELGASGFISKSARMEELRRAVQTVLDGGIYTPGGIDLGEEGDAEISELIARLRTLTPQQTRVLA
MLAEGLLNKQIAYALNVSEATIKAHVSAILQKLRVDSRTQAVICLSRIGAGTLSENI

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=219, Percent_Identity=34.2465753424658, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786747, Length=194, Percent_Identity=27.319587628866, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1790102, Length=193, Percent_Identity=32.6424870466321, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788712, Length=193, Percent_Identity=28.4974093264249, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788546, Length=221, Percent_Identity=23.9819004524887, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789937, Length=213, Percent_Identity=25.8215962441315, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787473, Length=213, Percent_Identity=28.6384976525822, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788222, Length=193, Percent_Identity=23.3160621761658, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23102; Mature: 22971

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDYRFVVADDHPLFRGALQQALSGFGADCEILEAEDFESAKAAIDGDLDIDLVLLDLAM
CCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHCCCCCCCEEEEEEECC
PGASGLSGLVALRGLAPAVPIVIVSAHDDPQTIRRAVELGASGFISKSARMEELRRAVQT
CCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
VLDGGIYTPGGIDLGEEGDAEISELIARLRTLTPQQTRVLAMLAEGLLNKQIAYALNVSE
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEECCHH
ATIKAHVSAILQKLRVDSRTQAVICLSRIGAGTLSENI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PDYRFVVADDHPLFRGALQQALSGFGADCEILEAEDFESAKAAIDGDLDIDLVLLDLAM
CCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHCCCCCCCEEEEEEECC
PGASGLSGLVALRGLAPAVPIVIVSAHDDPQTIRRAVELGASGFISKSARMEELRRAVQT
CCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
VLDGGIYTPGGIDLGEEGDAEISELIARLRTLTPQQTRVLAMLAEGLLNKQIAYALNVSE
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEECCHH
ATIKAHVSAILQKLRVDSRTQAVICLSRIGAGTLSENI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]