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The map label for this gene is yecS [H]

Identifier: 110632402

GI number: 110632402

Start: 48884

End: 49813

Strand: Reverse

Name: yecS [H]

Synonym: Meso_0040

Alternate gene names: 110632402

Gene position: 49813-48884 (Counterclockwise)

Preceding gene: 110632403

Following gene: 110632401

Centisome position: 1.13

GC content: 59.14

Gene sequence:

>930_bases
ATGAACACCACGGCACAAGACATAAGCGCGTCGCCCGGACAAAGTGCTGCGCTGCGCGTTTCGAGGAATGTCGCCGACGC
CTACAAGCCTTTCCCGATATGGCGGCTGGTGGCGTGGCTCGTTCTCGGCTGGATCGTTCTGGAAGCGGTCATGCTGGTCG
GCCAGAATCCGAATTTCGGGTGGGCGACGGTCGGCGAGTACCTCTTCCACCAGAATATTCTGGATGGCCTCAAGATCACA
CTCGGTCTGAGCGTTGTCTCAATGGCGCTGGGCATCCTGTTCGGGCTGGTCATCGCCTTGATGCGCATGTCGCCGGACCG
GCTTCTGTCCGGCTTTGCAGCCGGCTTCCTGTGGTTCTTTCGCGCCGTTCCGCTGCTTGTGCAACTGATCTTCTGGTACA
ACCTCTCGGCGCTCTTTCCAGAAGTGAAAATCTCGATACCGTTTGGTCCCGAGCTGGGAGCATGGGAGACGAACAGCTTG
ATTTCGCCGCTCACGGCGGCAATCATCGGCCTTGCGCTTCACGAGGCCGCCTACATGGCCGAGATCATTCGAGGCGGTCT
GCTTTCGGTCGACCGCGGACAGATCGAAGCGACACAGGCATTCGGCATGTCCCGCGCGCGGGCCTTGCGTCGGGTTATCC
TACCGCAGGCCATGCGATTCATCGTGCCGCCGTCGGGCAATCAGTTCATCTCCATGGTAAAGGCGACTTCGCTCGTCAGC
GTCATCGCGATGTCCGATCTGCTCTACTCGGTGCAGGCCATCTACAATCGAACCTTCGAGGTCATTCCGCTGCTTCTGGT
CGCCGCGGCCTGGTATCTTTTTATCGTTTCGCTTCTGAATGTAGGCCAGGAGTTTCTGGAGCGGCATTTCGGTCGCAGCG
AACGCGGCGTGGTCGATGACGACGCTCTTTCCGAAGAGGCTGAGAGTTAA

Upstream 100 bases:

>100_bases
ATTCTTCATGAGAACGGCACTTACGACACGATCATGAAGAAGTGGGGCCTTGAAAACAACATGCTAGCCAAACCCGGCAT
CAACCTGTCGACCTGGTAAG

Downstream 100 bases:

>100_bases
AAATGAGTTCCGACGAACCCATCGTTAGCGCCGTCGACGTTCACAAGTCCTTCGGCAACAACAAGGTCCTCAAGGGAATC
AACATGGAGGTTTCCACCGG

Product: polar amino acid ABC transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MNTTAQDISASPGQSAALRVSRNVADAYKPFPIWRLVAWLVLGWIVLEAVMLVGQNPNFGWATVGEYLFHQNILDGLKIT
LGLSVVSMALGILFGLVIALMRMSPDRLLSGFAAGFLWFFRAVPLLVQLIFWYNLSALFPEVKISIPFGPELGAWETNSL
ISPLTAAIIGLALHEAAYMAEIIRGGLLSVDRGQIEATQAFGMSRARALRRVILPQAMRFIVPPSGNQFISMVKATSLVS
VIAMSDLLYSVQAIYNRTFEVIPLLLVAAAWYLFIVSLLNVGQEFLERHFGRSERGVVDDDALSEEAES

Sequences:

>Translated_309_residues
MNTTAQDISASPGQSAALRVSRNVADAYKPFPIWRLVAWLVLGWIVLEAVMLVGQNPNFGWATVGEYLFHQNILDGLKIT
LGLSVVSMALGILFGLVIALMRMSPDRLLSGFAAGFLWFFRAVPLLVQLIFWYNLSALFPEVKISIPFGPELGAWETNSL
ISPLTAAIIGLALHEAAYMAEIIRGGLLSVDRGQIEATQAFGMSRARALRRVILPQAMRFIVPPSGNQFISMVKATSLVS
VIAMSDLLYSVQAIYNRTFEVIPLLLVAAAWYLFIVSLLNVGQEFLERHFGRSERGVVDDDALSEEAES
>Mature_309_residues
MNTTAQDISASPGQSAALRVSRNVADAYKPFPIWRLVAWLVLGWIVLEAVMLVGQNPNFGWATVGEYLFHQNILDGLKIT
LGLSVVSMALGILFGLVIALMRMSPDRLLSGFAAGFLWFFRAVPLLVQLIFWYNLSALFPEVKISIPFGPELGAWETNSL
ISPLTAAIIGLALHEAAYMAEIIRGGLLSVDRGQIEATQAFGMSRARALRRVILPQAMRFIVPPSGNQFISMVKATSLVS
VIAMSDLLYSVQAIYNRTFEVIPLLLVAAAWYLFIVSLLNVGQEFLERHFGRSERGVVDDDALSEEAES

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=224, Percent_Identity=38.3928571428571, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1788646, Length=225, Percent_Identity=31.5555555555556, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786873, Length=221, Percent_Identity=33.4841628959276, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787030, Length=218, Percent_Identity=33.0275229357798, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1786874, Length=187, Percent_Identity=33.1550802139037, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787087, Length=225, Percent_Identity=31.5555555555556, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788645, Length=207, Percent_Identity=31.8840579710145, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082239, Length=177, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787086, Length=230, Percent_Identity=27.8260869565217, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI48994930, Length=137, Percent_Identity=32.8467153284672, Blast_Score=78, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33961; Mature: 33961

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTAQDISASPGQSAALRVSRNVADAYKPFPIWRLVAWLVLGWIVLEAVMLVGQNPNFG
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
WATVGEYLFHQNILDGLKITLGLSVVSMALGILFGLVIALMRMSPDRLLSGFAAGFLWFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
RAVPLLVQLIFWYNLSALFPEVKISIPFGPELGAWETNSLISPLTAAIIGLALHEAAYMA
HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EIIRGGLLSVDRGQIEATQAFGMSRARALRRVILPQAMRFIVPPSGNQFISMVKATSLVS
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VIAMSDLLYSVQAIYNRTFEVIPLLLVAAAWYLFIVSLLNVGQEFLERHFGRSERGVVDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DALSEEAES
HHHHHCCCC
>Mature Secondary Structure
MNTTAQDISASPGQSAALRVSRNVADAYKPFPIWRLVAWLVLGWIVLEAVMLVGQNPNFG
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
WATVGEYLFHQNILDGLKITLGLSVVSMALGILFGLVIALMRMSPDRLLSGFAAGFLWFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
RAVPLLVQLIFWYNLSALFPEVKISIPFGPELGAWETNSLISPLTAAIIGLALHEAAYMA
HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EIIRGGLLSVDRGQIEATQAFGMSRARALRRVILPQAMRFIVPPSGNQFISMVKATSLVS
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VIAMSDLLYSVQAIYNRTFEVIPLLLVAAAWYLFIVSLLNVGQEFLERHFGRSERGVVDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DALSEEAES
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]