Click here to switch to the map view.

The map label for this gene is omp33

Identifier: 109948236

GI number: 109948236

Start: 1539690

End: 1540445

Strand: Reverse

Name: omp33

Synonym: Hac_1770

Alternate gene names: NA

Gene position: 1540445-1539690 (Counterclockwise)

Preceding gene: 109948241

Following gene: 109948230

Centisome position: 99.13

GC content: 42.33

Gene sequence:

>756_bases
ATGAAAAATTTTTTTTCTAAACCTTTGCTAGCTTTGGTTATGTCTGTGAATACGCTATTGGCGATGGATAGTAATGGCGT
GTTTATAGGAGCGGGTTATTTGCAAGGGGAGGCACAAATGCATGCGAATATCAATTCTCACAAACAAGTCACTAGTGCCC
CCATCAGAGGCTTTGATGTGAATGTGGGGTATCAATTTTTCTTTGGGAAATACTTTGGCTTGCGCGCTTATGGGTTTCTT
GATTATGCGCGTGCTAGCTCTCTCAAGCTTAAAAACCCTAACTATAAAAACTCTTTGGGTAAAGTTGAGCAATTGGCTGA
CCAAATCGGTGAGGATCAAGCCGATAACACCCTTTCTCAAGTCAATCGCTTATCCAATCTCGCTAACCCCAAGATCTTTT
CGCCCAACATGCTCACTTATGGAGGGGCTATGGATTTGATGGTCAATTTCATCAACAATGGTATCATGAGTTTAGGGGTT
TTTGGTGGGGTGCAATTCGCTGGGAATTCATGGATTATGTCAACGCCGAGCTTTGAAGGGTTTTTGGTGGAGCAAGCGTT
GGTGAGTAAAAAACCCACTTCATTCCAGTTTTTATTCAATGTGGGTGCTCGCATTAGGGTCTTAAAACACTCTAGCATTG
AAGCAGGCGTGAAATTCCCCATGCTAAAGAAAAACCCCTACATTACCGCAAAAGACTTGGATATGGGGTTTAGGCGTGTG
TATTCGTGGTATGTGAATTATGTATTCACTTTCTAG

Upstream 100 bases:

>100_bases
TTTATCTTTATTTACCAAAATATTTCATTTTAAACCTTTTTTAATTATTTTTTTGGTATTCTTTTCAAGTAACAAAAAAT
TATATTTTAGGGAGTCATAA

Downstream 100 bases:

>100_bases
GGTATTCCCCTAGAGTTTTAGCGTGCTTTCAATGATTTGAATCAATTATTCTTTTCTTTTTTCTAAACTTTTGGGCGTCC
ATTCTGCGTAGTTGAACGCA

Product: outer membrane protein 33

Products: NA

Alternate protein names: Outer Membrane Protein HopQ; Outer Membrane Protein HopZ; Outer Membrane Protein HorE; Outer Membrane Protein/Porin; Outer Membrane Protein HorC; Outer Membrane Protein SabB/HopO; Outer Membrane Protein HorJ; Outer Membrane Protein,HopV SabB SabA; Outer Membrane Protein HopA; Outer Membrane Protein BabA; Outer Membrane Protein HopD; Outer Membrane Protein ,Adhesin BabA BabB; Outer Membrane Protein Omp; Outer Membrane Function; Adhesin; Outer Membrane Protein HorF; Outer Membrane Protein HorL; Outer Membrane Protein,HopV BabB BabA; Outer Membrane Protein HopG

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKNFFSKPLLALVMSVNTLLAMDSNGVFIGAGYLQGEAQMHANINSHKQVTSAPIRGFDVNVGYQFFFGKYFGLRAYGFL
DYARASSLKLKNPNYKNSLGKVEQLADQIGEDQADNTLSQVNRLSNLANPKIFSPNMLTYGGAMDLMVNFINNGIMSLGV
FGGVQFAGNSWIMSTPSFEGFLVEQALVSKKPTSFQFLFNVGARIRVLKHSSIEAGVKFPMLKKNPYITAKDLDMGFRRV
YSWYVNYVFTF

Sequences:

>Translated_251_residues
MKNFFSKPLLALVMSVNTLLAMDSNGVFIGAGYLQGEAQMHANINSHKQVTSAPIRGFDVNVGYQFFFGKYFGLRAYGFL
DYARASSLKLKNPNYKNSLGKVEQLADQIGEDQADNTLSQVNRLSNLANPKIFSPNMLTYGGAMDLMVNFINNGIMSLGV
FGGVQFAGNSWIMSTPSFEGFLVEQALVSKKPTSFQFLFNVGARIRVLKHSSIEAGVKFPMLKKNPYITAKDLDMGFRRV
YSWYVNYVFTF
>Mature_251_residues
MKNFFSKPLLALVMSVNTLLAMDSNGVFIGAGYLQGEAQMHANINSHKQVTSAPIRGFDVNVGYQFFFGKYFGLRAYGFL
DYARASSLKLKNPNYKNSLGKVEQLADQIGEDQADNTLSQVNRLSNLANPKIFSPNMLTYGGAMDLMVNFINNGIMSLGV
FGGVQFAGNSWIMSTPSFEGFLVEQALVSKKPTSFQFLFNVGARIRVLKHSSIEAGVKFPMLKKNPYITAKDLDMGFRRV
YSWYVNYVFTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27998; Mature: 27998

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNFFSKPLLALVMSVNTLLAMDSNGVFIGAGYLQGEAQMHANINSHKQVTSAPIRGFDV
CCCHHHHHHHHHHHHHHHHEEECCCCEEEEECEECCCCCEECCCCCCCHHHCCCCCCEEE
NVGYQFFFGKYFGLRAYGFLDYARASSLKLKNPNYKNSLGKVEQLADQIGEDQADNTLSQ
CCCHHEEHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
VNRLSNLANPKIFSPNMLTYGGAMDLMVNFINNGIMSLGVFGGVQFAGNSWIMSTPSFEG
HHHHHHHCCCCEECCCCEEECCHHHHHHHHHHCCHHHHHHHCCEEECCCEEEEECCCCCH
FLVEQALVSKKPTSFQFLFNVGARIRVLKHSSIEAGVKFPMLKKNPYITAKDLDMGFRRV
HHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEECCCCEEEEHHHHHHHHHH
YSWYVNYVFTF
HHHHHHHHCCC
>Mature Secondary Structure
MKNFFSKPLLALVMSVNTLLAMDSNGVFIGAGYLQGEAQMHANINSHKQVTSAPIRGFDV
CCCHHHHHHHHHHHHHHHHEEECCCCEEEEECEECCCCCEECCCCCCCHHHCCCCCCEEE
NVGYQFFFGKYFGLRAYGFLDYARASSLKLKNPNYKNSLGKVEQLADQIGEDQADNTLSQ
CCCHHEEHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
VNRLSNLANPKIFSPNMLTYGGAMDLMVNFINNGIMSLGVFGGVQFAGNSWIMSTPSFEG
HHHHHHHCCCCEECCCCEEECCHHHHHHHHHHCCHHHHHHHCCEEECCCEEEEECCCCCH
FLVEQALVSKKPTSFQFLFNVGARIRVLKHSSIEAGVKFPMLKKNPYITAKDLDMGFRRV
HHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEECCCCEEEEHHHHHHHHHH
YSWYVNYVFTF
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA