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The map label for this gene is trmU

Identifier: 109948168

GI number: 109948168

Start: 1475787

End: 1476839

Strand: Reverse

Name: trmU

Synonym: Hac_1695

Alternate gene names: NA

Gene position: 1476839-1475787 (Counterclockwise)

Preceding gene: 109948169

Following gene: 109948167

Centisome position: 95.04

GC content: 38.56

Gene sequence:

>1053_bases
ATGAAAAAGATTAAAGCTTTAGCCTTATTTAGTGGGGGGCTAGATAGTTTGTTATCCATGAAATTACTCATTGATCAAGG
CATTGAAGTAACCGCCTTACACTTTAATATAGGGTTTGGGGGGAATAAGGATAAAAGAGAGTATTTTGAAAACGCCACCG
CACAAATCGGGGCTAAACTCTTAGTGTGTGATATTAGAGAGCAATTTTTTAACGATGTGTTGTTCAAGCCAAAATACGGC
TATGGGAAATATTTCAACCCTTGTATAGACTGCCATGCCAACATGTTTAGAAACGCGTTTTATAAAATGCTTGAACTAAA
CGCAGATTTTGTTTTGAGCGGGGAAGTGTTAGGGCAACGCCCTAAATCTCAAAGAAAAGAAGCATTAGATCAGGTGAGAA
AATTGGTTAGAGCGGTGGGCGAAGAGGTGCGTTTTGATGGGATTTTAGACAGAACGCAAGAAAGTAATGAAAAAGCGCAA
TTTTTAGATGAATTGTTACTAAGACCCATGAGCGCTAAACTCTTAGAGCCTACTTTTATGGAAAAAAAGGGTTGGGTTGA
TAGAGAAAAGCTTTTAGATGTGAATGGTAGGGGGCGTGCTAGGCAATTACAAATGGTTAAAGATTATGGTTTGAAATATT
ACGAAAAGCCGGGTGGGGGGTGCTTGCTTACGGATATTCAAGTGAGTAATAAGATTAAGAATTTAAAAGAATACAGAGAA
ATGGTGTTTGAAGACAGCGTGATTGTCAAAATCGGGCGCTATTTTGTCTTACCCAATAACGCCCGCTTGGTGGTGGCAAG
GAATGAAGAGGAAAATCATAAACTAGACATTCAGCACCCCTTAATGGATAAAATTGAATTGTTAGGTTGTAAAGGTCCTT
TGAGTTTGGTGGATAAAAATGCGAGTAAAGAAGATAAAGAATTAGCTGGTCGTATCGCTTTAGGGTATGCTAAAACTTCA
ACAGAACAAGCTTATCTCATTCAAATAGGGAATGAAAAACGCGAGCTTCACCCTTTGGATAAAGAGAGCGCTAGGGAGTA
TTTATTCACTTAA

Upstream 100 bases:

>100_bases
AAATCCCTAAAAGCCCGCTTTCTTTTAGCGAAAAAATGATCGCTTTAAAAAAGGTCCGCCAAGCCATCATTAAATTAAAA
CAAGGAGAATTAGTCGCCAT

Downstream 100 bases:

>100_bases
AAAGAGATTTTTAAGAGTTTTAAGGGTTTTCTTTTTATACTATTAATAAAAAGTTCTAATCAGCGTTAAGCTGTTTTTTA
GGAGGTTTGCATGCAGGAGT

Product: tRNA methyltransferase

Products: NA

Alternate protein names: TRNA-Methyltransferase; Thiamine Biosynthesis ProteinExsB; tRNA Methyltransferase; Argininosuccinate Synthase; Queuosine Synthesis; tRNA -Methyltransferase; tRNA Methyl Transferase; Arginino Succinate Synthase; Thiamine Biosynthesis Protein-Like Protein; TRNA(5-Methylaminomethyl-2-Thiouridylate) Methyltransferase; tRNA Methyl Transferase-Like Protein; ThiI Family Protein

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MKKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLLVCDIREQFFNDVLFKPKYG
YGKYFNPCIDCHANMFRNAFYKMLELNADFVLSGEVLGQRPKSQRKEALDQVRKLVRAVGEEVRFDGILDRTQESNEKAQ
FLDELLLRPMSAKLLEPTFMEKKGWVDREKLLDVNGRGRARQLQMVKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKEYRE
MVFEDSVIVKIGRYFVLPNNARLVVARNEEENHKLDIQHPLMDKIELLGCKGPLSLVDKNASKEDKELAGRIALGYAKTS
TEQAYLIQIGNEKRELHPLDKESAREYLFT

Sequences:

>Translated_350_residues
MKKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLLVCDIREQFFNDVLFKPKYG
YGKYFNPCIDCHANMFRNAFYKMLELNADFVLSGEVLGQRPKSQRKEALDQVRKLVRAVGEEVRFDGILDRTQESNEKAQ
FLDELLLRPMSAKLLEPTFMEKKGWVDREKLLDVNGRGRARQLQMVKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKEYRE
MVFEDSVIVKIGRYFVLPNNARLVVARNEEENHKLDIQHPLMDKIELLGCKGPLSLVDKNASKEDKELAGRIALGYAKTS
TEQAYLIQIGNEKRELHPLDKESAREYLFT
>Mature_350_residues
MKKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLLVCDIREQFFNDVLFKPKYG
YGKYFNPCIDCHANMFRNAFYKMLELNADFVLSGEVLGQRPKSQRKEALDQVRKLVRAVGEEVRFDGILDRTQESNEKAQ
FLDELLLRPMSAKLLEPTFMEKKGWVDREKLLDVNGRGRARQLQMVKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKEYRE
MVFEDSVIVKIGRYFVLPNNARLVVARNEEENHKLDIQHPLMDKIELLGCKGPLSLVDKNASKEDKELAGRIALGYAKTS
TEQAYLIQIGNEKRELHPLDKESAREYLFT

Specific function: Unknown

COG id: COG0482

COG function: function code J; Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40072; Mature: 40072

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKL
CCCHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCEE
LVCDIREQFFNDVLFKPKYGYGKYFNPCIDCHANMFRNAFYKMLELNADFVLSGEVLGQR
EEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHCCC
PKSQRKEALDQVRKLVRAVGEEVRFDGILDRTQESNEKAQFLDELLLRPMSAKLLEPTFM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHCCCHHH
EKKGWVDREKLLDVNGRGRARQLQMVKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKEYRE
HHCCCCCHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEHHHHHHHHHHHHHH
MVFEDSVIVKIGRYFVLPNNARLVVARNEEENHKLDIQHPLMDKIELLGCKGPLSLVDKN
HHHCCCCEEEECCEEEECCCCEEEEECCCCCCCEEECCCHHHHHHHHHCCCCCHHHHCCC
ASKEDKELAGRIALGYAKTSTEQAYLIQIGNEKRELHPLDKESAREYLFT
CCCCHHHHHHHEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MKKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKL
CCCHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCEE
LVCDIREQFFNDVLFKPKYGYGKYFNPCIDCHANMFRNAFYKMLELNADFVLSGEVLGQR
EEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHCCC
PKSQRKEALDQVRKLVRAVGEEVRFDGILDRTQESNEKAQFLDELLLRPMSAKLLEPTFM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHCCCHHH
EKKGWVDREKLLDVNGRGRARQLQMVKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKEYRE
HHCCCCCHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEHHHHHHHHHHHHHH
MVFEDSVIVKIGRYFVLPNNARLVVARNEEENHKLDIQHPLMDKIELLGCKGPLSLVDKN
HHHCCCCEEEECCEEEECCCCEEEEECCCCCCCEEECCCHHHHHHHHHCCCCCHHHHCCC
ASKEDKELAGRIALGYAKTSTEQAYLIQIGNEKRELHPLDKESAREYLFT
CCCCHHHHHHHEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA