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The map label for this gene is rplJ [H]

Identifier: 109948063

GI number: 109948063

Start: 1375456

End: 1375938

Strand: Reverse

Name: rplJ [H]

Synonym: Hac_1580

Alternate gene names: 109948063

Gene position: 1375938-1375456 (Counterclockwise)

Preceding gene: 109948064

Following gene: 109948062

Centisome position: 88.55

GC content: 39.54

Gene sequence:

>483_bases
ATGCAAAAACAGCATAAAGTAGAGCTAGTCGTTAGCTTGAAATCGCAATTTGATGGTGCTAAAGCTCTTTTAATTTGCGA
TTATAAGGGTCTTAGCGTGAGCAAGTTGGAAGCTTTAAGGAATAAGGCTCGTACTCAAGGCATTAAGGTGCAAGTGATTA
AAAACACGCTTGCCCATATTGCAATGAAAGAAGTGGGTTATTCTCATTTGGATTTGAAAGAAACCAATGTGTTTTTGTGG
GGCGATGATCAAATCGCTCTTTCTAAGCTCGTGTTTGACTTCCAAAAAGATCACAAAAATCACTTTGTGTTAAAAGCGGG
CTTGTTTGATAAAGAAAGCGTTAGCGTAGCTCATGTGGAAGCGGTTTCAAAACTTCCAAGCAAAGAAGAGCTTATGGGAA
TGTTGCTTTCTGTTTGGACGGCTCCGGCACGCTATTTTGTGACCGGTTTAGACAATTTGCGTAAAGCAAAAGAAGAAAAC
TAA

Upstream 100 bases:

>100_bases
GTTTTTAATCTTAGGCTGAAGATCGTAAGAGCTAAAAGGCTTAAAATTTCTTTTTTAAAAAGATAATCTTGCAGAGGTCT
AGTCTAGAAAGGAGGAAAAG

Downstream 100 bases:

>100_bases
GAGCCCCTATTGTGGCTTTAATTAAAAAATTTGAAGGATTGAATTATGGCAATTTCAAAAGAAGAAGTGTTAGAGTATAT
TGGTTCATTGAGCGTTTTAG

Product: 50S ribosomal protein L10

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MQKQHKVELVVSLKSQFDGAKALLICDYKGLSVSKLEALRNKARTQGIKVQVIKNTLAHIAMKEVGYSHLDLKETNVFLW
GDDQIALSKLVFDFQKDHKNHFVLKAGLFDKESVSVAHVEAVSKLPSKEELMGMLLSVWTAPARYFVTGLDNLRKAKEEN

Sequences:

>Translated_160_residues
MQKQHKVELVVSLKSQFDGAKALLICDYKGLSVSKLEALRNKARTQGIKVQVIKNTLAHIAMKEVGYSHLDLKETNVFLW
GDDQIALSKLVFDFQKDHKNHFVLKAGLFDKESVSVAHVEAVSKLPSKEELMGMLLSVWTAPARYFVTGLDNLRKAKEEN
>Mature_160_residues
MQKQHKVELVVSLKSQFDGAKALLICDYKGLSVSKLEALRNKARTQGIKVQVIKNTLAHIAMKEVGYSHLDLKETNVFLW
GDDQIALSKLVFDFQKDHKNHFVLKAGLFDKESVSVAHVEAVSKLPSKEELMGMLLSVWTAPARYFVTGLDNLRKAKEEN

Specific function: Unknown

COG id: COG0244

COG function: function code J; Ribosomal protein L10

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022973
- InterPro:   IPR001790
- InterPro:   IPR002363 [H]

Pfam domain/function: PF00466 Ribosomal_L10 [H]

EC number: NA

Molecular weight: Translated: 18024; Mature: 18024

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS01109 RIBOSOMAL_L10 ; PS00108 PROTEIN_KINASE_ST

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKQHKVELVVSLKSQFDGAKALLICDYKGLSVSKLEALRNKARTQGIKVQVIKNTLAHI
CCCCHHHHHEEEEHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHH
AMKEVGYSHLDLKETNVFLWGDDQIALSKLVFDFQKDHKNHFVLKAGLFDKESVSVAHVE
HHHHCCCCCCCEECCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHH
AVSKLPSKEELMGMLLSVWTAPARYFVTGLDNLRKAKEEN
HHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQKQHKVELVVSLKSQFDGAKALLICDYKGLSVSKLEALRNKARTQGIKVQVIKNTLAHI
CCCCHHHHHEEEEHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHH
AMKEVGYSHLDLKETNVFLWGDDQIALSKLVFDFQKDHKNHFVLKAGLFDKESVSVAHVE
HHHHCCCCCCCEECCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHH
AVSKLPSKEELMGMLLSVWTAPARYFVTGLDNLRKAKEEN
HHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA