Click here to switch to the map view.

The map label for this gene is yohD [H]

Identifier: 109947839

GI number: 109947839

Start: 1149480

End: 1150061

Strand: Reverse

Name: yohD [H]

Synonym: Hac_1329

Alternate gene names: 109947839

Gene position: 1150061-1149480 (Counterclockwise)

Preceding gene: 109947842

Following gene: 109947838

Centisome position: 74.01

GC content: 36.6

Gene sequence:

>582_bases
ATGCAAGAAGCGTTATTGCATTTTCAAGAGAATTTTAAAGAGTGGGGTTATCTTATTTTATTTGTGTATTCTTTAGGGGG
TGGGTTTGTAGGCATTATCATCGCTTCTATTTTGAGCGCTACCACGCACGCTTTAGATATAAAAATAACGATTTTAGTCG
CTTTTTTAGGGAATCTAATAGGGAGTGGGGGGCTTGTTGTTTTTGCCCGCTATCAAAAAAGAGGATTTTTGCAATATTTC
CACAAGCACAGAAGAAAGCTTGCTTTAGCAAGTGTGTGGGTGAAACGCTATGCGTTATTTATGATTTTTGTCAATAAGTA
TTTGTATGGGATTAAAAGCGTTGTGCCTTTGGCGATTGGCTTTAGCAAATACCCTTTAAAGAAGTTTTTATGGCTTAATG
GTTTGTCTAGTTTTTTATGGGCGCTGATTGTGGGGGGCATTTCTTTTAAGGCGAGCGATTGGGTGAAAACGCTCTATGAT
GAATTTTCTCAACATTCTTCGTTTTTCCTTATTGGTTTGGTTCTCATTTTGCTTTTAATATGGTTTTTATTAGCGCGATA
TTCACGCAAAATAGGTTTTTAA

Upstream 100 bases:

>100_bases
TTGTTATTATACTAAAAGATAGCGTTTAAATCACTAACCGCTTTAACTCGGTTAAATAAGTTTGGATAACATGAAAATAA
AAACTAAAAAGAGGGTTTGA

Downstream 100 bases:

>100_bases
GCAAGATTTTAACGGAAATTTAAAAGGAATATGTTAAACTACGCCCACAAGCATCCGTGCAAAAAGCGGGTGCGTTAGTA
TCTTTAACACAAGGATTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MQEALLHFQENFKEWGYLILFVYSLGGGFVGIIIASILSATTHALDIKITILVAFLGNLIGSGGLVVFARYQKRGFLQYF
HKHRRKLALASVWVKRYALFMIFVNKYLYGIKSVVPLAIGFSKYPLKKFLWLNGLSSFLWALIVGGISFKASDWVKTLYD
EFSQHSSFFLIGLVLILLLIWFLLARYSRKIGF

Sequences:

>Translated_193_residues
MQEALLHFQENFKEWGYLILFVYSLGGGFVGIIIASILSATTHALDIKITILVAFLGNLIGSGGLVVFARYQKRGFLQYF
HKHRRKLALASVWVKRYALFMIFVNKYLYGIKSVVPLAIGFSKYPLKKFLWLNGLSSFLWALIVGGISFKASDWVKTLYD
EFSQHSSFFLIGLVLILLLIWFLLARYSRKIGF
>Mature_193_residues
MQEALLHFQENFKEWGYLILFVYSLGGGFVGIIIASILSATTHALDIKITILVAFLGNLIGSGGLVVFARYQKRGFLQYF
HKHRRKLALASVWVKRYALFMIFVNKYLYGIKSVVPLAIGFSKYPLKKFLWLNGLSSFLWALIVGGISFKASDWVKTLYD
EFSQHSSFFLIGLVLILLLIWFLLARYSRKIGF

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=152, Percent_Identity=28.2894736842105, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22104; Mature: 22104

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEALLHFQENFKEWGYLILFVYSLGGGFVGIIIASILSATTHALDIKITILVAFLGNLI
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSGGLVVFARYQKRGFLQYFHKHRRKLALASVWVKRYALFMIFVNKYLYGIKSVVPLAIG
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FSKYPLKKFLWLNGLSSFLWALIVGGISFKASDWVKTLYDEFSQHSSFFLIGLVLILLLI
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
WFLLARYSRKIGF
HHHHHHHHHHCCC
>Mature Secondary Structure
MQEALLHFQENFKEWGYLILFVYSLGGGFVGIIIASILSATTHALDIKITILVAFLGNLI
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSGGLVVFARYQKRGFLQYFHKHRRKLALASVWVKRYALFMIFVNKYLYGIKSVVPLAIG
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FSKYPLKKFLWLNGLSSFLWALIVGGISFKASDWVKTLYDEFSQHSSFFLIGLVLILLLI
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
WFLLARYSRKIGF
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]