Click here to switch to the map view.

The map label for this gene is ybeY [C]

Identifier: 109947837

GI number: 109947837

Start: 1148394

End: 1148816

Strand: Reverse

Name: ybeY [C]

Synonym: Hac_1327

Alternate gene names: 109947837

Gene position: 1148816-1148394 (Counterclockwise)

Preceding gene: 109947838

Following gene: 109947830

Centisome position: 73.93

GC content: 39.95

Gene sequence:

>423_bases
ATGCTAGAAACAGACAACCAAACCCCACTTAAACTAGACTTTTTGTTATTAGAAAAAATTGCAAGACTTTTAGCCCCCAC
TCAAATGGTTGAACTTGTTTTAGTGAGCGGTGAAAAAATGCGAGAAATCAACAGGAATTTAAGAAATTGCGATTACGCCA
CCGATGTTTTAAGCTTCCCTTTAGAAGCGATCCCTCACACCCCTTTAGGGAGCGTGGTGATTAACATGTCACTAGCTCAA
ACAAACGCCCTAAAATTAGGGCATAGTTTAGAAAATGAGATCGCTCTATTATTCATCCATGGAATGTTGCATTTACTGGG
CTATGACCATGAAAAAGACCAAGGCGAGCAACGGCAAAAAGAGAGCGAACTCATTAAGACTTTTAACTTGCCTTTGAGTT
TGATTGAACGGGTGCAAGATTAG

Upstream 100 bases:

>100_bases
ATGGGTAGAAGAAATTAAAGGTTCTTTCGCTTAATCTTTTAAGCCCTAAATTTTAGGGCTTTTTAACTTCTTTTTTATAT
TTTATGCACATGTTGGATTG

Downstream 100 bases:

>100_bases
TTTTAGCTTTTGTTCCCAAATGCTGACACTTATTTTAAATTTTTTATTCGTATTTGATAAAACAAACCCCATTTTTAAAG
CCGTTTAAAGCCCTTCATAA

Product: metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MLETDNQTPLKLDFLLLEKIARLLAPTQMVELVLVSGEKMREINRNLRNCDYATDVLSFPLEAIPHTPLGSVVINMSLAQ
TNALKLGHSLENEIALLFIHGMLHLLGYDHEKDQGEQRQKESELIKTFNLPLSLIERVQD

Sequences:

>Translated_140_residues
MLETDNQTPLKLDFLLLEKIARLLAPTQMVELVLVSGEKMREINRNLRNCDYATDVLSFPLEAIPHTPLGSVVINMSLAQ
TNALKLGHSLENEIALLFIHGMLHLLGYDHEKDQGEQRQKESELIKTFNLPLSLIERVQD
>Mature_140_residues
MLETDNQTPLKLDFLLLEKIARLLAPTQMVELVLVSGEKMREINRNLRNCDYATDVLSFPLEAIPHTPLGSVVINMSLAQ
TNALKLGHSLENEIALLFIHGMLHLLGYDHEKDQGEQRQKESELIKTFNLPLSLIERVQD

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_HELAH (Q17WB0)

Other databases:

- EMBL:   AM260522
- RefSeq:   YP_665065.1
- ProteinModelPortal:   Q17WB0
- SMR:   Q17WB0
- STRING:   Q17WB0
- GeneID:   4176275
- GenomeReviews:   AM260522_GR
- KEGG:   hac:Hac_1327
- NMPDR:   fig|382638.8.peg.1287
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   GCDYATD
- ProtClustDB:   PRK00016
- BioCyc:   HACI382638:HAC_1327-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 15901; Mature: 15901

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLETDNQTPLKLDFLLLEKIARLLAPTQMVELVLVSGEKMREINRNLRNCDYATDVLSFP
CCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCC
LEAIPHTPLGSVVINMSLAQTNALKLGHSLENEIALLFIHGMLHLLGYDHEKDQGEQRQK
HHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ESELIKTFNLPLSLIERVQD
HHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MLETDNQTPLKLDFLLLEKIARLLAPTQMVELVLVSGEKMREINRNLRNCDYATDVLSFP
CCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCC
LEAIPHTPLGSVVINMSLAQTNALKLGHSLENEIALLFIHGMLHLLGYDHEKDQGEQRQK
HHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ESELIKTFNLPLSLIERVQD
HHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA