Click here to switch to the map view.

The map label for this gene is dapF [H]

Identifier: 109947347

GI number: 109947347

Start: 680115

End: 680909

Strand: Reverse

Name: dapF [H]

Synonym: Hac_0786

Alternate gene names: 109947347

Gene position: 680909-680115 (Counterclockwise)

Preceding gene: 109947349

Following gene: 109947346

Centisome position: 43.82

GC content: 39.62

Gene sequence:

>795_bases
ATGGTATTTTACAAATATTCAGGGAGCGGAAATGATTTTTTAATCACGCAAAGCTTCAAAAAAAGGGATTTTTCCAATTT
AGCCAGACAGGTGTGCCATAGGCATGAGGGTTTTGGTGCTGATGGGCTTGTGGTCGTCTTACCGAGTAAGGATTATGACT
ATGAATGGGATTTTTACAATTCAGACGGCTCTCAAGCTAGCATGTGTGGGAATGCGAGCCGTTGCGTGGGGCTGTTTGCT
TACCAACACCATATAGCCCCTAAAAACCATGTTTTTTTAGCCGGACAAAGAAAAATTTCTATCTGCATAGAAGAGCCAAA
TATCATAGAGAGCAATCTCGGTAGCGGCGACATCTTAGAGATAATTTCCACTTCAGGGGGGAAAAAATCTTTTTCAAACG
ACAGCGTTTTGGCAAGTATCCCTACTTTCTACCTCATAGATACAGGGGTGCCGCATTTAGTGGGATTTGTCAAAAAAAAA
GAGTCATTAAATTCTCTCAATATATTGGAATTAAGGGCTTTAAGGCATGCGTCTGACGCTAATGTTAATATCGCCTTTAT
AGAAAATAAAAAGACGATTTTTTTACAAACTTATGAAAGAGGGGTTGAAGATTTTACCCTAGCTTGCGGGACAGGCATGG
CGGCAACTTTTTTTGCTGCAAACGCCTTTTATAACACGCCTAGAAATGCCACCCTTATTCCTAAAAGCAACGAGCATTTA
GAGCTTTCTTTAAGGGATAATGAAATTTTTTATAAAGGTGCGGTGCGTTATATTGGCATGAGTGTTTTGTTATAA

Upstream 100 bases:

>100_bases
TAAACTAAACCAAAAGTTATAAAATGTTAGCTAAAAAACGCTCTTTTTAAGGATAAAATTTCTTATAATTTATAATTAAA
ATCAAAAAGGCTTGCAATCA

Downstream 100 bases:

>100_bases
AAGCAAAGTTTATTGTGTTGGCATGAGTGTTTTAGGGCATGGGTGTTTTTGATCATTATTGTTTTATGATTGTGTTGCAA
TTAAACATAATGTGCTATCA

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MVFYKYSGSGNDFLITQSFKKRDFSNLARQVCHRHEGFGADGLVVVLPSKDYDYEWDFYNSDGSQASMCGNASRCVGLFA
YQHHIAPKNHVFLAGQRKISICIEEPNIIESNLGSGDILEIISTSGGKKSFSNDSVLASIPTFYLIDTGVPHLVGFVKKK
ESLNSLNILELRALRHASDANVNIAFIENKKTIFLQTYERGVEDFTLACGTGMAATFFAANAFYNTPRNATLIPKSNEHL
ELSLRDNEIFYKGAVRYIGMSVLL

Sequences:

>Translated_264_residues
MVFYKYSGSGNDFLITQSFKKRDFSNLARQVCHRHEGFGADGLVVVLPSKDYDYEWDFYNSDGSQASMCGNASRCVGLFA
YQHHIAPKNHVFLAGQRKISICIEEPNIIESNLGSGDILEIISTSGGKKSFSNDSVLASIPTFYLIDTGVPHLVGFVKKK
ESLNSLNILELRALRHASDANVNIAFIENKKTIFLQTYERGVEDFTLACGTGMAATFFAANAFYNTPRNATLIPKSNEHL
ELSLRDNEIFYKGAVRYIGMSVLL
>Mature_264_residues
MVFYKYSGSGNDFLITQSFKKRDFSNLARQVCHRHEGFGADGLVVVLPSKDYDYEWDFYNSDGSQASMCGNASRCVGLFA
YQHHIAPKNHVFLAGQRKISICIEEPNIIESNLGSGDILEIISTSGGKKSFSNDSVLASIPTFYLIDTGVPHLVGFVKKK
ESLNSLNILELRALRHASDANVNIAFIENKKTIFLQTYERGVEDFTLACGTGMAATFFAANAFYNTPRNATLIPKSNEHL
ELSLRDNEIFYKGAVRYIGMSVLL

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=225, Percent_Identity=26.2222222222222, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 29351; Mature: 29351

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFYKYSGSGNDFLITQSFKKRDFSNLARQVCHRHEGFGADGLVVVLPSKDYDYEWDFYN
CEEEEEECCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEC
SDGSQASMCGNASRCVGLFAYQHHIAPKNHVFLAGQRKISICIEEPNIIESNLGSGDILE
CCCCCHHHCCCHHHHHEEEEHHHCCCCCCCEEEECCCEEEEEEECCCEEECCCCCCCEEE
IISTSGGKKSFSNDSVLASIPTFYLIDTGVPHLVGFVKKKESLNSLNILELRALRHASDA
EEECCCCCCCCCCCCEEEECCEEEEEECCHHHHHHHHHHHHCCCCCCCEEHHHHHCCCCC
NVNIAFIENKKTIFLQTYERGVEDFTLACGTGMAATFFAANAFYNTPRNATLIPKSNEHL
CEEEEEEECCCEEEEEEHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCCEE
ELSLRDNEIFYKGAVRYIGMSVLL
EEEEECCEEEEEHHHHHHHHEECC
>Mature Secondary Structure
MVFYKYSGSGNDFLITQSFKKRDFSNLARQVCHRHEGFGADGLVVVLPSKDYDYEWDFYN
CEEEEEECCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEC
SDGSQASMCGNASRCVGLFAYQHHIAPKNHVFLAGQRKISICIEEPNIIESNLGSGDILE
CCCCCHHHCCCHHHHHEEEEHHHCCCCCCCEEEECCCEEEEEEECCCEEECCCCCCCEEE
IISTSGGKKSFSNDSVLASIPTFYLIDTGVPHLVGFVKKKESLNSLNILELRALRHASDA
EEECCCCCCCCCCCCEEEECCEEEEEECCHHHHHHHHHHHHCCCCCCCEEHHHHHCCCCC
NVNIAFIENKKTIFLQTYERGVEDFTLACGTGMAATFFAANAFYNTPRNATLIPKSNEHL
CEEEEEEECCCEEEEEEHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCCEE
ELSLRDNEIFYKGAVRYIGMSVLL
EEEEECCEEEEEHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA