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The map label for this gene is ISHa1942 tnpA [H]

Identifier: 109947321

GI number: 109947321

Start: 660793

End: 661197

Strand: Reverse

Name: ISHa1942 tnpA [H]

Synonym: Hac_0753

Alternate gene names: 109947321

Gene position: 661197-660793 (Counterclockwise)

Preceding gene: 109947324

Following gene: 109947318

Centisome position: 42.55

GC content: 39.01

Gene sequence:

>405_bases
ATGCATGTGCATTTGGTGTTTGTTACTAAATACCGGCGTAAAGCGTTCAACAAGGAAGTGATAGATTTTTTAGGATCGGT
GTTTGCTAAAGTGTGTAAGGACTTTGAGAGCGAATTGGTAGAATTTGATGGGGAGAGCGATCATGTGCATTTGCTTATCA
ACTACCCTCCAAAAGTGAGCGTGAGTAAGTTAGTTAATTCTTTAAAAGGTGTTAGCAGTCGTTTAACTAGACAACACCAT
TTTAAAAGCGTTGAGACTAGTTTGTGGGGGAAGCATTTATGGTCGCCTAGTTATTTCGCTAGGAGTTGTGGGGGTGCACC
TTTAGAGATGATTAAGCAATACATACAAGAGCAAGAAACAACCGTATTAAATTGGCTAACTTTGATTTTTAGCAGAATGC
ACTAA

Upstream 100 bases:

>100_bases
CCCTTATTGACTTTTATAAAAGTATTTTAACCTCTTTTAGTTAAAATAGGTCTATGAAAAAAATTGATGATATGAGACAC
GGAAGACATTGTGTTTTTTA

Downstream 100 bases:

>100_bases
AAAGCGAATGGATCCAGGTAAAACGATACTCAAATAGCCTAACGGCTAAGCACTTACATCTCCGCCCTAAAGGACGGAGT
TTTTTGTGCTAGTGGGATAA

Product: ISHa1942 transposase A-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MHVHLVFVTKYRRKAFNKEVIDFLGSVFAKVCKDFESELVEFDGESDHVHLLINYPPKVSVSKLVNSLKGVSSRLTRQHH
FKSVETSLWGKHLWSPSYFARSCGGAPLEMIKQYIQEQETTVLNWLTLIFSRMH

Sequences:

>Translated_134_residues
MHVHLVFVTKYRRKAFNKEVIDFLGSVFAKVCKDFESELVEFDGESDHVHLLINYPPKVSVSKLVNSLKGVSSRLTRQHH
FKSVETSLWGKHLWSPSYFARSCGGAPLEMIKQYIQEQETTVLNWLTLIFSRMH
>Mature_134_residues
MHVHLVFVTKYRRKAFNKEVIDFLGSVFAKVCKDFESELVEFDGESDHVHLLINYPPKVSVSKLVNSLKGVSSRLTRQHH
FKSVETSLWGKHLWSPSYFARSCGGAPLEMIKQYIQEQETTVLNWLTLIFSRMH

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 17 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 15568; Mature: 15568

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVHLVFVTKYRRKAFNKEVIDFLGSVFAKVCKDFESELVEFDGESDHVHLLINYPPKVS
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
VSKLVNSLKGVSSRLTRQHHFKSVETSLWGKHLWSPSYFARSCGGAPLEMIKQYIQEQET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHH
TVLNWLTLIFSRMH
HHHHHHHHHHHHCC
>Mature Secondary Structure
MHVHLVFVTKYRRKAFNKEVIDFLGSVFAKVCKDFESELVEFDGESDHVHLLINYPPKVS
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
VSKLVNSLKGVSSRLTRQHHFKSVETSLWGKHLWSPSYFARSCGGAPLEMIKQYIQEQET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHH
TVLNWLTLIFSRMH
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]