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The map label for this gene is fliD [H]

Identifier: 109947241

GI number: 109947241

Start: 582038

End: 584095

Strand: Reverse

Name: fliD [H]

Synonym: Hac_0666

Alternate gene names: 109947241

Gene position: 584095-582038 (Counterclockwise)

Preceding gene: 109947242

Following gene: 109947240

Centisome position: 37.59

GC content: 39.65

Gene sequence:

>2058_bases
ATGGCAATAGGTTCATTAAGCTCATTAGGGCTTGGCAGTAAGGTTTTAAATTACGATGTGATTGACAAACTTAGGGATGC
TGATGAAAAGGCATTGATTGCACCATTAGACAAGAAAATGGAACAAAATGTTGAAAAACAAAAAGCCCTTGTAGAAATTA
AAACGCTTCTTTCAGCTCTAAAAGGTCCTATTAAAACACTCTCAGATTATTCCACTTATATCAGCCGAAAAAGCAATGTT
ACAGGCGATGCGTTGAGTGCGAGTGTGGGGGCTGGCGTGCCCATCCAAGACATTAAAGTGGATGTGCAAAATTTAGCACA
AGGCGATATTAATGAATTAGGGTCGAAATTTTCTTCAAGAGATGATATTTTTAGCCAAGTGGATACCACGCTCAAATTTT
ACACGCAAAACAAGGACTACGATATTGACATTAAAGCTGGAATGACCTTAGGCGATGTGGCTCAAAGCATCACAGACGCT
ACCAATGGTGAAGTGATGGGCATTGTGATGAAAACAGGGGGGAATGACCCTTATCAATTAATGGTGAATACCAAAAACAC
CGGCGAAGACAACCGCATTTATTTTGGCTCACACCTCCAATCCACGCTCACTAACAAAAACGCCCTTTCTTTAGGGGTTG
ATGAGAGTGGGAAAAATGAAGTGAGTTTGAATCTAAAGGGGGCTGATGGGAATATGCATGAAGTCCCTATTATTTTAGAA
CTCCCTGAAAGTGCTTCTGTCAAACAAAAAAACACAGCGATCCAAAAGGCGATAGAGCAGGCTTTAGAAAATGACCCTAA
TTTTAAAGATCTAATCGCTAATGGGGATATTTCCATAGATGTGATTCATGGGGGGGATTCTTTAATCATTAATGACAGGC
GTGGGGAAAAAATTGAAGTTAAAGGGAGTAAGGTCAAAGAGCTTGGGTTTTTACAAACCGCTACGCAAGAAAATGACTTG
CTAAAAAGCAGCCGCACAATTAAAGAGGGCAAATTAGAAGGGGTGATTAGCTTAAATAATCAAAAACTTGATTTAAGCGC
TTTAACTAAAGAGGGTAACACAAGCGAGCAAAACACAGACGCTATCATTCAAGCGATCAATTCTAAAGAAGGCTTGAATG
CATTTAAAAATGCAGAAGGCAAGCTTGTGATCAATACTAAAAATGGGATGCTCACTATCAAGGGTGAAGGCACTTTAGGC
AAGGATAGTTTGAAAGATTTAGGCTTGAATGCCGGCGTGGTGCAATCTTATGAAACTTCACAACAAACGCTTTTTAGGTC
TAAAAATTTGCAAAAAGCGAGCGATTCACAATTCACTTATAATGGGGTGAGTATCACACGCCCCACTAATGAGGTCAATG
ATGTGATCAGTGGGGTTAATATCACTTTAGAGCAAACCACAGAGCCTAATAAACCCGCCATCATTAGCGTGAGCAGGGAC
AATCAAGCCATTATAGATAGCCTTACTGAGTTTGTGAAAGCCTATAATGAGCTTATCCCTAAATTGGATGAAGACACTCG
CTATGATGCGGACACTAAGATCGCTGGGATTTTTAATGGCGTAGGTGATATTCGTACAATTCGCTCTTCTCTTAATAATG
TGTTTTCTTATAGTGTGCACACCGATAATGGAGTAGAAAGCTTGATGAAATACGGACTTAGTTTAGACGATAAGGGCGTG
ATGAGTTTAGATGAAGCTAAATTGAGTAGTGCATTAAATTCTAACCCTAAAGCGACTCAAGATTTTTTCTATGGGAGCGA
TAGCAAGGATATGGGGGGTAGAGAAATCCACCAAGAGGGTATTTTTTCTAAATTCAATCAAGTAGTCGCCAATCTTATAG
ACGGAGGGAACGCTAAATTAAAGATTTATGAAGATTCTCTAGACAGAGACGCTAAAAGCCTGACTAAAGATAAAGAAAAC
GCTCAAGAGCTTTTAAAAACCCGCTATAACATCATGGCGGAGCGTTTTGCCGCTTATGATAGTCAAATTTCTAAAGCGAA
TCAAAAGTTCAATTCCGTGCAAATGATGATCGATCAAGCGGCGGCCAAAAAAAATTAA

Upstream 100 bases:

>100_bases
GAGAAATTCCCTCTAAAGAAGCCGTGGAGCTTATGCAAAGAATGCACGATGTGATAGGCGTTATCTTTGATAAAAAAGGC
TAAAAATTTGGGGGTAAAAA

Downstream 100 bases:

>100_bases
AAATAAAAGAGCGATTAAATTTTAAAGGATAAAGGATTAAACCCATGCAATACGCTAACGCTTATCAAGCTTACCAGCAC
AATAGAGTGAGTGTGGAATC

Product: flagellar capping protein

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 685; Mature: 684

Protein sequence:

>685_residues
MAIGSLSSLGLGSKVLNYDVIDKLRDADEKALIAPLDKKMEQNVEKQKALVEIKTLLSALKGPIKTLSDYSTYISRKSNV
TGDALSASVGAGVPIQDIKVDVQNLAQGDINELGSKFSSRDDIFSQVDTTLKFYTQNKDYDIDIKAGMTLGDVAQSITDA
TNGEVMGIVMKTGGNDPYQLMVNTKNTGEDNRIYFGSHLQSTLTNKNALSLGVDESGKNEVSLNLKGADGNMHEVPIILE
LPESASVKQKNTAIQKAIEQALENDPNFKDLIANGDISIDVIHGGDSLIINDRRGEKIEVKGSKVKELGFLQTATQENDL
LKSSRTIKEGKLEGVISLNNQKLDLSALTKEGNTSEQNTDAIIQAINSKEGLNAFKNAEGKLVINTKNGMLTIKGEGTLG
KDSLKDLGLNAGVVQSYETSQQTLFRSKNLQKASDSQFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRD
NQAIIDSLTEFVKAYNELIPKLDEDTRYDADTKIAGIFNGVGDIRTIRSSLNNVFSYSVHTDNGVESLMKYGLSLDDKGV
MSLDEAKLSSALNSNPKATQDFFYGSDSKDMGGREIHQEGIFSKFNQVVANLIDGGNAKLKIYEDSLDRDAKSLTKDKEN
AQELLKTRYNIMAERFAAYDSQISKANQKFNSVQMMIDQAAAKKN

Sequences:

>Translated_685_residues
MAIGSLSSLGLGSKVLNYDVIDKLRDADEKALIAPLDKKMEQNVEKQKALVEIKTLLSALKGPIKTLSDYSTYISRKSNV
TGDALSASVGAGVPIQDIKVDVQNLAQGDINELGSKFSSRDDIFSQVDTTLKFYTQNKDYDIDIKAGMTLGDVAQSITDA
TNGEVMGIVMKTGGNDPYQLMVNTKNTGEDNRIYFGSHLQSTLTNKNALSLGVDESGKNEVSLNLKGADGNMHEVPIILE
LPESASVKQKNTAIQKAIEQALENDPNFKDLIANGDISIDVIHGGDSLIINDRRGEKIEVKGSKVKELGFLQTATQENDL
LKSSRTIKEGKLEGVISLNNQKLDLSALTKEGNTSEQNTDAIIQAINSKEGLNAFKNAEGKLVINTKNGMLTIKGEGTLG
KDSLKDLGLNAGVVQSYETSQQTLFRSKNLQKASDSQFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRD
NQAIIDSLTEFVKAYNELIPKLDEDTRYDADTKIAGIFNGVGDIRTIRSSLNNVFSYSVHTDNGVESLMKYGLSLDDKGV
MSLDEAKLSSALNSNPKATQDFFYGSDSKDMGGREIHQEGIFSKFNQVVANLIDGGNAKLKIYEDSLDRDAKSLTKDKEN
AQELLKTRYNIMAERFAAYDSQISKANQKFNSVQMMIDQAAAKKN
>Mature_684_residues
AIGSLSSLGLGSKVLNYDVIDKLRDADEKALIAPLDKKMEQNVEKQKALVEIKTLLSALKGPIKTLSDYSTYISRKSNVT
GDALSASVGAGVPIQDIKVDVQNLAQGDINELGSKFSSRDDIFSQVDTTLKFYTQNKDYDIDIKAGMTLGDVAQSITDAT
NGEVMGIVMKTGGNDPYQLMVNTKNTGEDNRIYFGSHLQSTLTNKNALSLGVDESGKNEVSLNLKGADGNMHEVPIILEL
PESASVKQKNTAIQKAIEQALENDPNFKDLIANGDISIDVIHGGDSLIINDRRGEKIEVKGSKVKELGFLQTATQENDLL
KSSRTIKEGKLEGVISLNNQKLDLSALTKEGNTSEQNTDAIIQAINSKEGLNAFKNAEGKLVINTKNGMLTIKGEGTLGK
DSLKDLGLNAGVVQSYETSQQTLFRSKNLQKASDSQFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRDN
QAIIDSLTEFVKAYNELIPKLDEDTRYDADTKIAGIFNGVGDIRTIRSSLNNVFSYSVHTDNGVESLMKYGLSLDDKGVM
SLDEAKLSSALNSNPKATQDFFYGSDSKDMGGREIHQEGIFSKFNQVVANLIDGGNAKLKIYEDSLDRDAKSLTKDKENA
QELLKTRYNIMAERFAAYDSQISKANQKFNSVQMMIDQAAAKKN

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 74617; Mature: 74485

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIGSLSSLGLGSKVLNYDVIDKLRDADEKALIAPLDKKMEQNVEKQKALVEIKTLLSAL
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
KGPIKTLSDYSTYISRKSNVTGDALSASVGAGVPIQDIKVDVQNLAQGDINELGSKFSSR
CCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCH
DDIFSQVDTTLKFYTQNKDYDIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQL
HHHHHHHHHHEEEEECCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCEEE
MVNTKNTGEDNRIYFGSHLQSTLTNKNALSLGVDESGKNEVSLNLKGADGNMHEVPIILE
EEECCCCCCCCEEEECCHHHHHHCCCCCEEECCCCCCCCEEEEEEECCCCCCEEEEEEEE
LPESASVKQKNTAIQKAIEQALENDPNFKDLIANGDISIDVIHGGDSLIINDRRGEKIEV
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHEECCCEEEEEEECCCEEEEECCCCCEEEE
KGSKVKELGFLQTATQENDLLKSSRTIKEGKLEGVISLNNQKLDLSALTKEGNTSEQNTD
CCCCHHHHHHHHHCCCHHHHHHHHCCHHCCCCCEEEEECCCEEEHHHHCCCCCCCCCHHH
AIIQAINSKEGLNAFKNAEGKLVINTKNGMLTIKGEGTLGKDSLKDLGLNAGVVQSYETS
HHHHHHCCCHHHHHHHCCCCEEEEEECCCEEEEECCCCCCHHHHHHCCCCCCHHCCCHHH
QQTLFRSKNLQKASDSQFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRD
HHHHHHHCCCCCCCCCCEEECCEEEECCCHHHHHHHCCCEEEEECCCCCCCCEEEEECCC
NQAIIDSLTEFVKAYNELIPKLDEDTRYDADTKIAGIFNGVGDIRTIRSSLNNVFSYSVH
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHEEEEEE
TDNGVESLMKYGLSLDDKGVMSLDEAKLSSALNSNPKATQDFFYGSDSKDMGGREIHQEG
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHHHHHH
IFSKFNQVVANLIDGGNAKLKIYEDSLDRDAKSLTKDKENAQELLKTRYNIMAERFAAYD
HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
SQISKANQKFNSVQMMIDQAAAKKN
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AIGSLSSLGLGSKVLNYDVIDKLRDADEKALIAPLDKKMEQNVEKQKALVEIKTLLSAL
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
KGPIKTLSDYSTYISRKSNVTGDALSASVGAGVPIQDIKVDVQNLAQGDINELGSKFSSR
CCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCH
DDIFSQVDTTLKFYTQNKDYDIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQL
HHHHHHHHHHEEEEECCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCEEE
MVNTKNTGEDNRIYFGSHLQSTLTNKNALSLGVDESGKNEVSLNLKGADGNMHEVPIILE
EEECCCCCCCCEEEECCHHHHHHCCCCCEEECCCCCCCCEEEEEEECCCCCCEEEEEEEE
LPESASVKQKNTAIQKAIEQALENDPNFKDLIANGDISIDVIHGGDSLIINDRRGEKIEV
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHEECCCEEEEEEECCCEEEEECCCCCEEEE
KGSKVKELGFLQTATQENDLLKSSRTIKEGKLEGVISLNNQKLDLSALTKEGNTSEQNTD
CCCCHHHHHHHHHCCCHHHHHHHHCCHHCCCCCEEEEECCCEEEHHHHCCCCCCCCCHHH
AIIQAINSKEGLNAFKNAEGKLVINTKNGMLTIKGEGTLGKDSLKDLGLNAGVVQSYETS
HHHHHHCCCHHHHHHHCCCCEEEEEECCCEEEEECCCCCCHHHHHHCCCCCCHHCCCHHH
QQTLFRSKNLQKASDSQFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRD
HHHHHHHCCCCCCCCCCEEECCEEEECCCHHHHHHHCCCEEEEECCCCCCCCEEEEECCC
NQAIIDSLTEFVKAYNELIPKLDEDTRYDADTKIAGIFNGVGDIRTIRSSLNNVFSYSVH
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHEEEEEE
TDNGVESLMKYGLSLDDKGVMSLDEAKLSSALNSNPKATQDFFYGSDSKDMGGREIHQEG
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHHHHHH
IFSKFNQVVANLIDGGNAKLKIYEDSLDRDAKSLTKDKENAQELLKTRYNIMAERFAAYD
HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
SQISKANQKFNSVQMMIDQAAAKKN
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]