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The map label for this gene is vacA beta fragment 9

Identifier: 109947102

GI number: 109947102

Start: 440927

End: 441049

Strand: Reverse

Name: vacA beta fragment 9

Synonym: Hac_0506

Alternate gene names: NA

Gene position: 441049-440927 (Counterclockwise)

Preceding gene: 109947103

Following gene: 109947101

Centisome position: 28.38

GC content: 43.9

Gene sequence:

>123_bases
TTGGCTAACCGCTCCAAAGATATTGACGCGCTTTATGCCCATTCAGGCACGCAAGGCAGGAATCTCTTGCAAACCTTATT
GGTTGATCATCATGATATTAGGCTATGCCAGAGAAATGATTGA

Upstream 100 bases:

>100_bases
CGCTCCTTTGGTCAAACGCAAGCGCCTCTTCTAAAGCGCCACTCCTAATTTAGTCCACATCCATGAGCCTCATTTTGGCA
CCCTTGAGAGCGCGTTTGAA

Downstream 100 bases:

>100_bases
TAACACAAGTGCCAGCGAAACCACCAAGCAATTGGATGCGGCAACTGACACTTGAAACAGCATAGCCCGTTTGGATCGCA
AAACAAGTGGTTTGCAAACT

Product: vacuolating cytotoxin fragment 9

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 40; Mature: 39

Protein sequence:

>40_residues
MANRSKDIDALYAHSGTQGRNLLQTLLVDHHDIRLCQRND

Sequences:

>Translated_40_residues
MANRSKDIDALYAHSGTQGRNLLQTLLVDHHDIRLCQRND
>Mature_39_residues
ANRSKDIDALYAHSGTQGRNLLQTLLVDHHDIRLCQRND

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 4590; Mature: 4459

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANRSKDIDALYAHSGTQGRNLLQTLLVDHHDIRLCQRND
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCC
>Mature Secondary Structure 
ANRSKDIDALYAHSGTQGRNLLQTLLVDHHDIRLCQRND
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA