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The map label for this gene is fliR [H]

Identifier: 109946963

GI number: 109946963

Start: 300254

End: 301021

Strand: Reverse

Name: fliR [H]

Synonym: Hac_0353

Alternate gene names: 109946963

Gene position: 301021-300254 (Counterclockwise)

Preceding gene: 109946964

Following gene: 109946962

Centisome position: 19.37

GC content: 38.93

Gene sequence:

>768_bases
ATGCTAGATTTTATTCAAGAGCTTAGCACCCCGCATGTAAGGGATTTTTTCTTATTATTTTTAAGGGTTAGTGGGGTGCT
ATCTTTTTTCCCTTTTTTTGAAAACCATTTGGTGCCATTGTCAGTGCGTGGGGCTTTGAGCTTGTATGTGAGTGCGATTT
TTTACCCTACTTTAGAATTTTCAAACGCCACTTACACGCCTGAGAGTTTCATCATCGCATGTTTATGTGAGCTGTTTTTA
GGGGTGTGCGCGTCTATCTTTTTGCAAATCGTCTTTGCGAGTTTAGTGTTTGCAACCGATAGCATTAGCTTTTCTATGGG
GCTTACCATGGCGAGCGTTTATGATCCTATTTCAGGAGCGCAAAAACCCATTGTGGGGCAAGCCCTTTTATTGCTAGCGA
TTTTAATTTTACTGGATTTATCTTTCCATCATCAAATCATTTTGTTTGTGGATCACAGCTTAAAAGCCGTCCCTTTAGGG
CAATTTGTCTTTGAACCGGCACTAGCTAAAAACATTGTCAAAGCCTTTTCGCACTTGTTTATTATAGGGTTTTCTATGGC
GTTCCCTATTTTGTGCTTGGTGCTATTGAGCGATATTATTTTTGGAATGATCATGAAAACACACCCTCAATTCAACTTGC
TTGCTATTGGTTTCCCAGTTAAAATTGCGATTGGGTTTGTGGGCATTATTTTAATTGTTTCGGCTATCATGGGGCGTTTT
AAAGATGAAATCAGTTTGGCGTTTAGTACGATTAGTAAAATCTTTTAA

Upstream 100 bases:

>100_bases
TTTGCTATCTTTTTTCTCTAATCCCTTTTTTTAATTTTTTTGCCACCTTGTTGCAAACCCTCATGCTCACGCACTACTTT
TTTATCCTTAAAGAAAAAGA

Downstream 100 bases:

>100_bases
AATAGCCTCTAACAATGCTATAATGACCACTTTAAAACCCCACTTATAAAGGTTCTATTTGTGGATAACTACACTTATAG
CGAATTGTTAAAAAGCTTGC

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNATYTPESFIIACLCELFL
GVCASIFLQIVFASLVFATDSISFSMGLTMASVYDPISGAQKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLG
QFVFEPALAKNIVKAFSHLFIIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIVSAIMGRF
KDEISLAFSTISKIF

Sequences:

>Translated_255_residues
MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNATYTPESFIIACLCELFL
GVCASIFLQIVFASLVFATDSISFSMGLTMASVYDPISGAQKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLG
QFVFEPALAKNIVKAFSHLFIIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIVSAIMGRF
KDEISLAFSTISKIF
>Mature_255_residues
MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNATYTPESFIIACLCELFL
GVCASIFLQIVFASLVFATDSISFSMGLTMASVYDPISGAQKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLG
QFVFEPALAKNIVKAFSHLFIIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIVSAIMGRF
KDEISLAFSTISKIF

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=229, Percent_Identity=25.3275109170306, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28158; Mature: 28158

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEF
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCC
SNATYTPESFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASVYDPISGA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
QKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLF
CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIVSAIMGRF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
KDEISLAFSTISKIF
HHHHHHHHHHHHHHC
>Mature Secondary Structure
MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEF
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCC
SNATYTPESFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASVYDPISGA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
QKPIVGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLF
CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIVSAIMGRF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
KDEISLAFSTISKIF
HHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]