| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is dnaJ [H]
Identifier: 109946879
GI number: 109946879
Start: 216137
End: 217252
Strand: Reverse
Name: dnaJ [H]
Synonym: Hac_0262
Alternate gene names: 109946879
Gene position: 217252-216137 (Counterclockwise)
Preceding gene: 109946881
Following gene: 109946878
Centisome position: 13.98
GC content: 40.32
Gene sequence:
>1116_bases GTGGAATTAAGTTATTATGAAATTTTAGAAGTGGAAAAACACAGCAACCAAGAGACGATTAAAAGGTCTTACAGAAAGCT CGCTTTAAAATACCACCCAGACAGAAACGCCGGCGATAAAGAAGCCGAAGAAAGATTCAAGCTCATCAATGAAGCCTATG GGGTGTTAAGCGATGAAAAGAAACGGGCCTTATACGATAGGTATGGTAAGCAAGGCTTAAATCAAGCCGGTGCAAGCCAA AGCGATTTTTCTGATTTTTTTGAAGACTTAGGATCGTTTTTTGAAGACGCTTTTGGGTTTAGCGCTAGGGGGAGTAAAAG GCAAAAAAGTGCTATCGCACCGGATTATTTGCAAACCATTAAATTGAGTTTTAAAGAAGCGGTTTTTGGCTGTAAAAAAA CAATTAAAGTCCAATACCAAAGCGTTTGTGAAGTTTGCGATGGCACAGGCGCTCAAGATAAAGCTCTAGAGACTTGTAAG CAATGCAATGGGCAAGGGCAAGTGTTTATGCGTCAGGGTTTTATGAGCTTTGCGCAAACTTGTGGGGCGTGTAAAGGCAA GGGCAAGATCATTAAAACCCCATGCCAAGCGTGTAAGGGCAAAACCTACATTCTTAAAGATGAAGAAATTGATGCGACAA TCCCTGAAGGCATTGATGATCAAAACCGCATGGTGCTTAAAAATAAGGGTAATGAATACGAGAAGGGCAAAAGAGGGGAT TTATATTTAGAAGTGCAAGTCAAAGAAGATGAGCATTTTAAGCGCAAGGGCTGTGATTTATTCATTGAAGCGCCGGTATT TTTCACCACTATCGCTTTAGGGCATACGATCAAAGTGCCGTCTTTAAAAGGAGATGAATTAGAATTAAAAATCCCTAGAA ACGCCAGAGACAAACAAACTTTTGTGTTTAGAAATGAGGGTGTGAAGCACCCTGAAAGCTCTTACAGGGGGAGTTTGATC GTGGTGTTGCAAGTGGTTTATCCTAAAAGTTTGGATAAAGAGCAGCAAGCGTTATTGGAGAAATTGCATGCGAGTTTTGG TTATGAGAGCGAGCCGCATAAAGGCCTTTTAGAAACTTGTATTTCTAAATTTAAAGATTGGTTTAAAGGTTGTTGA
Upstream 100 bases:
>100_bases TTCATCGTGTTATTTTATCTAAGTTTTGGCGTGCACAAAACACGCAAATTCATCGCTTTTAAGGTAAAATAAGCGTTTTG ATGCCATTTTTGGAGCGATC
Downstream 100 bases:
>100_bases TGCATGAGTTTCTAAAAGCTTTAAAAAACGCTTTCCCTCACACCATTTCTATTTTGTTAGGGTATTTGCTTATGGGAACG ACTTTTGGAATGCTTTTAAC
Product: chaperone protein DnaJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 371; Mature: 371
Protein sequence:
>371_residues MELSYYEILEVEKHSNQETIKRSYRKLALKYHPDRNAGDKEAEERFKLINEAYGVLSDEKKRALYDRYGKQGLNQAGASQ SDFSDFFEDLGSFFEDAFGFSARGSKRQKSAIAPDYLQTIKLSFKEAVFGCKKTIKVQYQSVCEVCDGTGAQDKALETCK QCNGQGQVFMRQGFMSFAQTCGACKGKGKIIKTPCQACKGKTYILKDEEIDATIPEGIDDQNRMVLKNKGNEYEKGKRGD LYLEVQVKEDEHFKRKGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDKQTFVFRNEGVKHPESSYRGSLI VVLQVVYPKSLDKEQQALLEKLHASFGYESEPHKGLLETCISKFKDWFKGC
Sequences:
>Translated_371_residues MELSYYEILEVEKHSNQETIKRSYRKLALKYHPDRNAGDKEAEERFKLINEAYGVLSDEKKRALYDRYGKQGLNQAGASQ SDFSDFFEDLGSFFEDAFGFSARGSKRQKSAIAPDYLQTIKLSFKEAVFGCKKTIKVQYQSVCEVCDGTGAQDKALETCK QCNGQGQVFMRQGFMSFAQTCGACKGKGKIIKTPCQACKGKTYILKDEEIDATIPEGIDDQNRMVLKNKGNEYEKGKRGD LYLEVQVKEDEHFKRKGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDKQTFVFRNEGVKHPESSYRGSLI VVLQVVYPKSLDKEQQALLEKLHASFGYESEPHKGLLETCISKFKDWFKGC >Mature_371_residues MELSYYEILEVEKHSNQETIKRSYRKLALKYHPDRNAGDKEAEERFKLINEAYGVLSDEKKRALYDRYGKQGLNQAGASQ SDFSDFFEDLGSFFEDAFGFSARGSKRQKSAIAPDYLQTIKLSFKEAVFGCKKTIKVQYQSVCEVCDGTGAQDKALETCK QCNGQGQVFMRQGFMSFAQTCGACKGKGKIIKTPCQACKGKTYILKDEEIDATIPEGIDDQNRMVLKNKGNEYEKGKRGD LYLEVQVKEDEHFKRKGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDKQTFVFRNEGVKHPESSYRGSLI VVLQVVYPKSLDKEQQALLEKLHASFGYESEPHKGLLETCISKFKDWFKGC
Specific function: Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion. Unfolded proteins bind initially to dnaJ; upon
COG id: COG0484
COG function: function code O; DnaJ-class molecular chaperone with C-terminal Zn finger domain
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI205360838, Length=341, Percent_Identity=29.6187683284457, Blast_Score=150, Evalue=2e-36, Organism=Homo sapiens, GI205360840, Length=341, Percent_Identity=29.6187683284457, Blast_Score=150, Evalue=2e-36, Organism=Homo sapiens, GI194328760, Length=353, Percent_Identity=29.4617563739377, Blast_Score=140, Evalue=1e-33, Organism=Homo sapiens, GI194328758, Length=355, Percent_Identity=29.8591549295775, Blast_Score=140, Evalue=1e-33, Organism=Homo sapiens, GI4504511, Length=353, Percent_Identity=28.8951841359773, Blast_Score=140, Evalue=1e-33, Organism=Homo sapiens, GI5031741, Length=354, Percent_Identity=28.5310734463277, Blast_Score=134, Evalue=2e-31, Organism=Homo sapiens, GI201862587, Length=358, Percent_Identity=25.9776536312849, Blast_Score=109, Evalue=5e-24, Organism=Homo sapiens, GI201862518, Length=358, Percent_Identity=25.9776536312849, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI56549115, Length=358, Percent_Identity=25.9776536312849, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI7706495, Length=329, Percent_Identity=26.4437689969605, Blast_Score=105, Evalue=6e-23, Organism=Homo sapiens, GI194328762, Length=304, Percent_Identity=26.3157894736842, Blast_Score=105, Evalue=8e-23, Organism=Homo sapiens, GI6631085, Length=393, Percent_Identity=24.4274809160305, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI47777312, Length=96, Percent_Identity=51.0416666666667, Blast_Score=94, Evalue=3e-19, Organism=Homo sapiens, GI5453690, Length=392, Percent_Identity=23.2142857142857, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI88501736, Length=79, Percent_Identity=51.8987341772152, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI23503241, Length=99, Percent_Identity=48.4848484848485, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI27151736, Length=79, Percent_Identity=51.8987341772152, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI17388799, Length=102, Percent_Identity=51.9607843137255, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI4885495, Length=102, Percent_Identity=51.9607843137255, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI21553335, Length=81, Percent_Identity=48.1481481481481, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI45504382, Length=70, Percent_Identity=51.4285714285714, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI39204547, Length=185, Percent_Identity=30.8108108108108, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI29126218, Length=70, Percent_Identity=52.8571428571429, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI27735107, Length=88, Percent_Identity=42.0454545454545, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI217035105, Length=76, Percent_Identity=43.421052631579, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI9558755, Length=101, Percent_Identity=41.5841584158416, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI68077168, Length=91, Percent_Identity=43.956043956044, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI68077166, Length=91, Percent_Identity=43.956043956044, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI194306642, Length=86, Percent_Identity=45.3488372093023, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI194306640, Length=86, Percent_Identity=45.3488372093023, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI24308127, Length=94, Percent_Identity=40.4255319148936, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI56687498, Length=115, Percent_Identity=35.6521739130435, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI22749377, Length=68, Percent_Identity=48.5294117647059, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI1786197, Length=357, Percent_Identity=40.8963585434174, Blast_Score=265, Evalue=4e-72, Organism=Escherichia coli, GI1787235, Length=351, Percent_Identity=27.9202279202279, Blast_Score=101, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17553096, Length=375, Percent_Identity=29.8666666666667, Blast_Score=140, Evalue=9e-34, Organism=Caenorhabditis elegans, GI17553098, Length=358, Percent_Identity=30.1675977653631, Blast_Score=140, Evalue=1e-33, Organism=Caenorhabditis elegans, GI17507263, Length=351, Percent_Identity=29.0598290598291, Blast_Score=130, Evalue=1e-30, Organism=Caenorhabditis elegans, GI212645553, Length=360, Percent_Identity=26.6666666666667, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17563890, Length=368, Percent_Identity=26.0869565217391, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17534355, Length=384, Percent_Identity=23.9583333333333, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17554644, Length=85, Percent_Identity=48.2352941176471, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI115532378, Length=96, Percent_Identity=39.5833333333333, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17554874, Length=91, Percent_Identity=41.7582417582418, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17568643, Length=72, Percent_Identity=50, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI86563276, Length=122, Percent_Identity=39.344262295082, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17538236, Length=100, Percent_Identity=42, Blast_Score=69, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6324265, Length=374, Percent_Identity=29.6791443850267, Blast_Score=145, Evalue=1e-35, Organism=Saccharomyces cerevisiae, GI6323870, Length=358, Percent_Identity=29.3296089385475, Blast_Score=142, Evalue=9e-35, Organism=Saccharomyces cerevisiae, GI6321094, Length=389, Percent_Identity=27.2493573264781, Blast_Score=107, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6323119, Length=372, Percent_Identity=26.8817204301075, Blast_Score=85, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6324252, Length=434, Percent_Identity=24.1935483870968, Blast_Score=82, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6324103, Length=87, Percent_Identity=44.8275862068966, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6323813, Length=108, Percent_Identity=42.5925925925926, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6322194, Length=106, Percent_Identity=39.622641509434, Blast_Score=73, Evalue=8e-14, Organism=Saccharomyces cerevisiae, GI6324321, Length=68, Percent_Identity=47.0588235294118, Blast_Score=70, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6320888, Length=99, Percent_Identity=36.3636363636364, Blast_Score=67, Evalue=4e-12, Organism=Drosophila melanogaster, GI20129487, Length=351, Percent_Identity=30.1994301994302, Blast_Score=142, Evalue=3e-34, Organism=Drosophila melanogaster, GI24584014, Length=351, Percent_Identity=30.1994301994302, Blast_Score=142, Evalue=3e-34, Organism=Drosophila melanogaster, GI24646562, Length=345, Percent_Identity=29.5652173913043, Blast_Score=138, Evalue=5e-33, Organism=Drosophila melanogaster, GI24646560, Length=345, Percent_Identity=29.5652173913043, Blast_Score=138, Evalue=5e-33, Organism=Drosophila melanogaster, GI24646558, Length=345, Percent_Identity=29.5652173913043, Blast_Score=138, Evalue=5e-33, Organism=Drosophila melanogaster, GI24646556, Length=345, Percent_Identity=29.5652173913043, Blast_Score=138, Evalue=5e-33, Organism=Drosophila melanogaster, GI21357547, Length=345, Percent_Identity=29.5652173913043, Blast_Score=138, Evalue=5e-33, Organism=Drosophila melanogaster, GI28574949, Length=347, Percent_Identity=26.2247838616715, Blast_Score=132, Evalue=3e-31, Organism=Drosophila melanogaster, GI45552813, Length=368, Percent_Identity=28.2608695652174, Blast_Score=131, Evalue=8e-31, Organism=Drosophila melanogaster, GI45549272, Length=366, Percent_Identity=27.8688524590164, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI45552811, Length=368, Percent_Identity=28.2608695652174, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI24658562, Length=390, Percent_Identity=25.8974358974359, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI24658555, Length=390, Percent_Identity=25.8974358974359, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI85726398, Length=380, Percent_Identity=25, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI18858081, Length=357, Percent_Identity=26.3305322128852, Blast_Score=95, Evalue=9e-20, Organism=Drosophila melanogaster, GI24654066, Length=101, Percent_Identity=48.5148514851485, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24654070, Length=101, Percent_Identity=48.5148514851485, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24654068, Length=101, Percent_Identity=48.5148514851485, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24654072, Length=101, Percent_Identity=48.5148514851485, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI19920464, Length=349, Percent_Identity=26.0744985673352, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI17737735, Length=70, Percent_Identity=51.4285714285714, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI28574723, Length=70, Percent_Identity=51.4285714285714, Blast_Score=83, Evalue=4e-16, Organism=Drosophila melanogaster, GI24668523, Length=70, Percent_Identity=51.4285714285714, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24762799, Length=91, Percent_Identity=43.956043956044, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI24668492, Length=73, Percent_Identity=43.8356164383562, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI24651439, Length=72, Percent_Identity=43.0555555555556, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI161077138, Length=65, Percent_Identity=49.2307692307692, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24651436, Length=72, Percent_Identity=43.0555555555556, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21358311, Length=72, Percent_Identity=43.0555555555556, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012724 - InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 - InterPro: IPR001305 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C; PF00684 DnaJ_CXXCXGXG [H]
EC number: NA
Molecular weight: Translated: 42127; Mature: 42127
Theoretical pI: Translated: 8.27; Mature: 8.27
Prosite motif: PS50076 DNAJ_2 ; PS00637 DNAJ_CXXCXGXG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELSYYEILEVEKHSNQETIKRSYRKLALKYHPDRNAGDKEAEERFKLINEAYGVLSDEK CCCCHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHCCCCHH KRALYDRYGKQGLNQAGASQSDFSDFFEDLGSFFEDAFGFSARGSKRQKSAIAPDYLQTI HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHH KLSFKEAVFGCKKTIKVQYQSVCEVCDGTGAQDKALETCKQCNGQGQVFMRQGFMSFAQT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH CGACKGKGKIIKTPCQACKGKTYILKDEEIDATIPEGIDDQNRMVLKNKGNEYEKGKRGD HCCCCCCCCEEECHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC LYLEVQVKEDEHFKRKGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDKQT EEEEEEECCCHHHHHCCCCEEEECHHHHHHHHHCCEEECCCCCCCCEEEECCCCCCCCCE FVFRNEGVKHPESSYRGSLIVVLQVVYPKSLDKEQQALLEKLHASFGYESEPHKGLLETC EEEECCCCCCCCHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH ISKFKDWFKGC HHHHHHHHCCC >Mature Secondary Structure MELSYYEILEVEKHSNQETIKRSYRKLALKYHPDRNAGDKEAEERFKLINEAYGVLSDEK CCCCHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHCCCCHH KRALYDRYGKQGLNQAGASQSDFSDFFEDLGSFFEDAFGFSARGSKRQKSAIAPDYLQTI HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHH KLSFKEAVFGCKKTIKVQYQSVCEVCDGTGAQDKALETCKQCNGQGQVFMRQGFMSFAQT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH CGACKGKGKIIKTPCQACKGKTYILKDEEIDATIPEGIDDQNRMVLKNKGNEYEKGKRGD HCCCCCCCCEEECHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC LYLEVQVKEDEHFKRKGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDKQT EEEEEEECCCHHHHHCCCCEEEECHHHHHHHHHCCEEECCCCCCCCEEEECCCCCCCCCE FVFRNEGVKHPESSYRGSLIVVLQVVYPKSLDKEQQALLEKLHASFGYESEPHKGLLETC EEEECCCCCCCCHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH ISKFKDWFKGC HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]