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The map label for this gene is dnaX

Identifier: 109946865

GI number: 109946865

Start: 205902

End: 206909

Strand: Direct

Name: dnaX

Synonym: Hac_0246

Alternate gene names: NA

Gene position: 205902-206909 (Clockwise)

Preceding gene: 109946864

Following gene: 109946866

Centisome position: 13.25

GC content: 35.62

Gene sequence:

>1008_bases
TTGGATCATTATTTAAAACAGCATCTCCCTAAAGCGGTGTTTTTGTATGGGGAGTTTGATTTTTTCATCCATTATTACAC
TCAAGCGATTAGCTCACTTTTTAAGCTCAATAACCCTAACATAGAAACTTCGCTTTTTTATGCGAGCGATTATGAAAAAA
GCCTTATTATGACCCTTTTAGAGCAAGATTCTTTATTTGGCGAGAGCAGTTTGGTTGTTTTAAAACTAGACTTTGCATTG
CATAAGAAATTTAAAGAAAATGATATTAATCTTTTTTTAAAAGCACTAGAGCGGCCTAGCCATAATAGGCTTATCATAGG
GCTTTATAACTCTAAAAGCGACACCACCAAATACAAATACAGCAGCGAGGCCATCGTTAAATTTTTCCAAAAAAGCCCCT
TGAAAGATGAAGCGATTTATGCACGCTTTTTTACCCCTAAAACTTGGGAGAGTTTGAAACTCTTACAAGAAAGGGCTAAT
GTTTTACATTTAGACATCAGCAACCATCTTTTAAACACTCTTTTTGAAATCAATAACGAAGATTTAGGCATTGCGTTTAA
CGATTTAGACAAACTAGCGATTTTAAAGGCACCCATCACTTTAGAAGACATTCAAGAATTAAGCTCCAATGCGGGGGATA
TGGATTTGCAAAAGCTCATTTTAGGGCTTTTTCTTAAAAAAAGCGTTCTTGACATTTATGATTATTTGCTCAAAGAGGGC
AAGAGGGATGCGGATATTTTAAGGGGTTTGGAAAGGTATTTTTACCAGCTTTTTTTATTTTTCGCTCACATTAAAACGAC
CGGTTCAGTGGATGCTAAAGAAATTTTAGGCTACGCTCCTCCTAAAGAAATCACCGAAAATTACATTAAAAACGCCCCGC
GTTTGAAAGAAGCCGGCTATAAGAGGGTTTTTGAAATTTTTAGGTTGTGGCACATTCAAAGCATGCAAGGGCAAAAGGAA
TTAGGCTTTTTGTATTTGACCCAGATTCAAAAGATTATTAATCCTTAA

Upstream 100 bases:

>100_bases
TTAGAAAAGGTGCGCGTTAAAATCACGCATGCTCATTTAATTTTAGGGCAAGTTAGGGGTGAAATCACAGAAAGGATTAA
AGAGCATGTATCGTAAAGAT

Downstream 100 bases:

>100_bases
AATTTAGGTTTTTTTGCAAAAACTAAAATTTTGTTTAACTTTTAGCAATGCTTTAATTTTTTAAAAACTCTATTTTTATG
ATAAAACTCTTAAGGGGATA

Product: DNA polymerase III subunit delta

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MDHYLKQHLPKAVFLYGEFDFFIHYYTQAISSLFKLNNPNIETSLFYASDYEKSLIMTLLEQDSLFGESSLVVLKLDFAL
HKKFKENDINLFLKALERPSHNRLIIGLYNSKSDTTKYKYSSEAIVKFFQKSPLKDEAIYARFFTPKTWESLKLLQERAN
VLHLDISNHLLNTLFEINNEDLGIAFNDLDKLAILKAPITLEDIQELSSNAGDMDLQKLILGLFLKKSVLDIYDYLLKEG
KRDADILRGLERYFYQLFLFFAHIKTTGSVDAKEILGYAPPKEITENYIKNAPRLKEAGYKRVFEIFRLWHIQSMQGQKE
LGFLYLTQIQKIINP

Sequences:

>Translated_335_residues
MDHYLKQHLPKAVFLYGEFDFFIHYYTQAISSLFKLNNPNIETSLFYASDYEKSLIMTLLEQDSLFGESSLVVLKLDFAL
HKKFKENDINLFLKALERPSHNRLIIGLYNSKSDTTKYKYSSEAIVKFFQKSPLKDEAIYARFFTPKTWESLKLLQERAN
VLHLDISNHLLNTLFEINNEDLGIAFNDLDKLAILKAPITLEDIQELSSNAGDMDLQKLILGLFLKKSVLDIYDYLLKEG
KRDADILRGLERYFYQLFLFFAHIKTTGSVDAKEILGYAPPKEITENYIKNAPRLKEAGYKRVFEIFRLWHIQSMQGQKE
LGFLYLTQIQKIINP
>Mature_335_residues
MDHYLKQHLPKAVFLYGEFDFFIHYYTQAISSLFKLNNPNIETSLFYASDYEKSLIMTLLEQDSLFGESSLVVLKLDFAL
HKKFKENDINLFLKALERPSHNRLIIGLYNSKSDTTKYKYSSEAIVKFFQKSPLKDEAIYARFFTPKTWESLKLLQERAN
VLHLDISNHLLNTLFEINNEDLGIAFNDLDKLAILKAPITLEDIQELSSNAGDMDLQKLILGLFLKKSVLDIYDYLLKEG
KRDADILRGLERYFYQLFLFFAHIKTTGSVDAKEILGYAPPKEITENYIKNAPRLKEAGYKRVFEIFRLWHIQSMQGQKE
LGFLYLTQIQKIINP

Specific function: Could be the functional equivalent of DNA polymerase III delta subunit (holA) [H]

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010372 [H]

Pfam domain/function: PF06144 DNA_pol3_delta [H]

EC number: 2.7.7.7

Molecular weight: Translated: 39099; Mature: 39099

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHYLKQHLPKAVFLYGEFDFFIHYYTQAISSLFKLNNPNIETSLFYASDYEKSLIMTLL
CCCHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHH
EQDSLFGESSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNSKSDTTKYKY
HHHCCCCCCCEEEEEECHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEE
SSEAIVKFFQKSPLKDEAIYARFFTPKTWESLKLLQERANVLHLDISNHLLNTLFEINNE
CHHHHHHHHHHCCCCCHHEEEEECCCCHHHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCC
DLGIAFNDLDKLAILKAPITLEDIQELSSNAGDMDLQKLILGLFLKKSVLDIYDYLLKEG
CCCEEHHCHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
KRDADILRGLERYFYQLFLFFAHIKTTGSVDAKEILGYAPPKEITENYIKNAPRLKEAGY
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHHH
KRVFEIFRLWHIQSMQGQKELGFLYLTQIQKIINP
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDHYLKQHLPKAVFLYGEFDFFIHYYTQAISSLFKLNNPNIETSLFYASDYEKSLIMTLL
CCCHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHH
EQDSLFGESSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNSKSDTTKYKY
HHHCCCCCCCEEEEEECHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEE
SSEAIVKFFQKSPLKDEAIYARFFTPKTWESLKLLQERANVLHLDISNHLLNTLFEINNE
CHHHHHHHHHHCCCCCHHEEEEECCCCHHHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCC
DLGIAFNDLDKLAILKAPITLEDIQELSSNAGDMDLQKLILGLFLKKSVLDIYDYLLKEG
CCCEEHHCHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
KRDADILRGLERYFYQLFLFFAHIKTTGSVDAKEILGYAPPKEITENYIKNAPRLKEAGY
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHHH
KRVFEIFRLWHIQSMQGQKELGFLYLTQIQKIINP
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]